Strain Fitness in Escherichia coli BL21 around ECD_00811

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00809 and ECD_00810 are separated by 40 nucleotidesECD_00810 and ECD_00811 are separated by 85 nucleotidesECD_00811 and ECD_00812 overlap by 1 nucleotides ECD_00809: ECD_00809 - multidrug efflux system protein, at 867,592 to 868,824 _00809 ECD_00810: ECD_00810 - uncharacterized protein, at 868,865 to 869,149 _00810 ECD_00811: ECD_00811 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis, at 869,235 to 870,050 _00811 ECD_00812: ECD_00812 - putative drug efflux MFS transporter, inner membrane protein, at 870,050 to 871,258 _00812 Position (kb) 869 870 871Strain fitness (log2 ratio) -1 0 1at 868.354 kb on + strand, within ECD_00809at 868.355 kb on - strand, within ECD_00809at 868.458 kb on + strand, within ECD_00809at 868.532 kb on + strand, within ECD_00809at 868.533 kb on - strand, within ECD_00809at 868.550 kb on + strand, within ECD_00809at 868.554 kb on + strand, within ECD_00809at 868.866 kb on + strandat 868.913 kb on + strand, within ECD_00810at 868.913 kb on + strand, within ECD_00810at 868.936 kb on - strand, within ECD_00810at 868.936 kb on - strand, within ECD_00810at 868.977 kb on + strand, within ECD_00810at 868.978 kb on - strand, within ECD_00810at 869.478 kb on - strand, within ECD_00811at 869.534 kb on + strand, within ECD_00811at 869.535 kb on - strand, within ECD_00811at 869.610 kb on - strand, within ECD_00811at 869.619 kb on - strand, within ECD_00811at 870.113 kb on - strandat 870.138 kb on - strandat 870.154 kb on + strandat 870.158 kb on + strandat 870.158 kb on + strandat 870.537 kb on - strand, within ECD_00812at 870.709 kb on - strand, within ECD_00812at 870.709 kb on - strand, within ECD_00812at 870.709 kb on - strand, within ECD_00812at 870.709 kb on - strand, within ECD_00812at 870.713 kb on - strand, within ECD_00812at 870.721 kb on + strand, within ECD_00812at 870.741 kb on - strand, within ECD_00812at 870.977 kb on + strand, within ECD_00812at 870.978 kb on - strand, within ECD_00812at 870.978 kb on - strand, within ECD_00812at 870.978 kb on - strand, within ECD_00812at 870.978 kb on - strand, within ECD_00812at 871.027 kb on + strand, within ECD_00812at 871.027 kb on + strand, within ECD_00812at 871.027 kb on + strand, within ECD_00812at 871.028 kb on - strand, within ECD_00812at 871.028 kb on - strand, within ECD_00812

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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868,354 + ECD_00809 0.62 -1.4
868,355 - ECD_00809 0.62 -0.2
868,458 + ECD_00809 0.70 +0.3
868,532 + ECD_00809 0.76 -1.7
868,533 - ECD_00809 0.76 +0.7
868,550 + ECD_00809 0.78 -0.0
868,554 + ECD_00809 0.78 -0.4
868,866 + +0.4
868,913 + ECD_00810 0.17 +0.3
868,913 + ECD_00810 0.17 +0.6
868,936 - ECD_00810 0.25 -0.2
868,936 - ECD_00810 0.25 +0.1
868,977 + ECD_00810 0.39 +0.6
868,978 - ECD_00810 0.40 -0.8
869,478 - ECD_00811 0.30 +1.7
869,534 + ECD_00811 0.37 +0.7
869,535 - ECD_00811 0.37 +1.3
869,610 - ECD_00811 0.46 -0.7
869,619 - ECD_00811 0.47 -0.7
870,113 - -0.0
870,138 - -0.6
870,154 + +0.3
870,158 + -0.3
870,158 + +0.1
870,537 - ECD_00812 0.40 -0.6
870,709 - ECD_00812 0.55 +0.0
870,709 - ECD_00812 0.55 +0.5
870,709 - ECD_00812 0.55 +0.1
870,709 - ECD_00812 0.55 +0.8
870,713 - ECD_00812 0.55 -0.5
870,721 + ECD_00812 0.56 +0.1
870,741 - ECD_00812 0.57 +0.3
870,977 + ECD_00812 0.77 -0.6
870,978 - ECD_00812 0.77 -0.0
870,978 - ECD_00812 0.77 -0.8
870,978 - ECD_00812 0.77 +0.1
870,978 - ECD_00812 0.77 -0.8
871,027 + ECD_00812 0.81 -0.4
871,027 + ECD_00812 0.81 +0.4
871,027 + ECD_00812 0.81 -1.5
871,028 - ECD_00812 0.81 +0.1
871,028 - ECD_00812 0.81 +0.4

Or see this region's nucleotide sequence