Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00149 and ECD_00150 are separated by 50 nucleotides ECD_00150 and ECD_00151 overlap by 1 nucleotides ECD_00151 and ECD_00152 overlap by 4 nucleotides
ECD_00149: ECD_00149 - ferrichrome outer membrane transporter, at 170,327 to 172,570
_00149
ECD_00150: ECD_00150 - iron(3+)-hydroxamate import ABC transporter ATPase, at 172,621 to 173,418
_00150
ECD_00151: ECD_00151 - iron(3+)-hydroxamate import ABC transporter periplasmic binding protein, at 173,418 to 174,308
_00151
ECD_00152: ECD_00152 - iron(3+)-hydroxamate import ABC transporter permease, at 174,305 to 176,287
_00152
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1 at 172.465 kb on + strand at 172.487 kb on + strand at 172.487 kb on + strand at 172.511 kb on + strand at 172.511 kb on + strand at 172.512 kb on - strand at 172.512 kb on - strand at 172.666 kb on - strand at 172.668 kb on + strand at 172.669 kb on - strand at 172.669 kb on - strand at 172.669 kb on - strand at 172.767 kb on + strand, within ECD_00150 at 173.198 kb on + strand, within ECD_00150 at 173.269 kb on + strand, within ECD_00150 at 173.528 kb on + strand, within ECD_00151 at 173.529 kb on - strand, within ECD_00151 at 173.560 kb on + strand, within ECD_00151 at 173.610 kb on + strand, within ECD_00151 at 173.679 kb on - strand, within ECD_00151 at 173.751 kb on - strand, within ECD_00151 at 173.763 kb on - strand, within ECD_00151 at 173.783 kb on + strand, within ECD_00151 at 173.849 kb on - strand, within ECD_00151 at 173.889 kb on + strand, within ECD_00151 at 173.979 kb on - strand, within ECD_00151 at 174.075 kb on - strand, within ECD_00151 at 174.086 kb on + strand, within ECD_00151 at 174.107 kb on + strand, within ECD_00151 at 174.203 kb on + strand, within ECD_00151 at 174.241 kb on - strand at 174.592 kb on + strand, within ECD_00152 at 174.646 kb on + strand, within ECD_00152 at 174.693 kb on + strand, within ECD_00152 at 174.743 kb on - strand, within ECD_00152 at 174.792 kb on + strand, within ECD_00152 at 174.922 kb on - strand, within ECD_00152
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 172,465 + +0.6 172,487 + +1.2 172,487 + +0.5 172,511 + -0.1 172,511 + +0.9 172,512 - -0.4 172,512 - +0.4 172,666 - -0.9 172,668 + -0.5 172,669 - -0.2 172,669 - -0.2 172,669 - +0.1 172,767 + ECD_00150 0.18 +0.3 173,198 + ECD_00150 0.72 -0.2 173,269 + ECD_00150 0.81 +0.1 173,528 + ECD_00151 0.12 -0.2 173,529 - ECD_00151 0.12 -0.4 173,560 + ECD_00151 0.16 -0.4 173,610 + ECD_00151 0.22 -0.3 173,679 - ECD_00151 0.29 +0.5 173,751 - ECD_00151 0.37 +1.0 173,763 - ECD_00151 0.39 +1.0 173,783 + ECD_00151 0.41 +0.4 173,849 - ECD_00151 0.48 +0.1 173,889 + ECD_00151 0.53 +0.2 173,979 - ECD_00151 0.63 +0.3 174,075 - ECD_00151 0.74 -1.1 174,086 + ECD_00151 0.75 +0.2 174,107 + ECD_00151 0.77 -0.3 174,203 + ECD_00151 0.88 -0.5 174,241 - -1.9 174,592 + ECD_00152 0.14 -0.1 174,646 + ECD_00152 0.17 +1.3 174,693 + ECD_00152 0.20 +0.3 174,743 - ECD_00152 0.22 -0.0 174,792 + ECD_00152 0.25 -0.1 174,922 - ECD_00152 0.31 +1.5
Or see this region's nucleotide sequence