Strain Fitness in Escherichia coli BL21 around ECD_03692

Experiment: Bas06

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03691 and ECD_03692 are separated by 369 nucleotidesECD_03692 and ECD_03693 are separated by 41 nucleotidesECD_03693 and ECD_03694 are separated by 65 nucleotides ECD_03691: ECD_03691 - DUF2233 family protein, at 3,891,462 to 3,892,226 _03691 ECD_03692: ECD_03692 - magnesium/nickel/cobalt transporter, at 3,892,596 to 3,893,546 _03692 ECD_03693: ECD_03693 - hypothetical protein, at 3,893,588 to 3,894,010 _03693 ECD_03694: ECD_03694 - hypothetical protein, at 3,894,076 to 3,894,924 _03694 Position (kb) 3892 3893 3894Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3891.599 kb on - strand, within ECD_03691at 3891.663 kb on - strand, within ECD_03691at 3891.714 kb on - strand, within ECD_03691at 3891.727 kb on - strand, within ECD_03691at 3891.832 kb on + strand, within ECD_03691at 3891.832 kb on + strand, within ECD_03691at 3891.833 kb on - strand, within ECD_03691at 3891.833 kb on - strand, within ECD_03691at 3891.833 kb on - strand, within ECD_03691at 3891.833 kb on - strand, within ECD_03691at 3891.917 kb on - strand, within ECD_03691at 3891.934 kb on + strand, within ECD_03691at 3891.934 kb on + strand, within ECD_03691at 3891.935 kb on - strand, within ECD_03691at 3891.946 kb on + strand, within ECD_03691at 3891.946 kb on + strand, within ECD_03691at 3891.946 kb on + strand, within ECD_03691at 3891.947 kb on - strand, within ECD_03691at 3891.947 kb on - strand, within ECD_03691at 3891.986 kb on + strand, within ECD_03691at 3892.012 kb on - strand, within ECD_03691at 3892.048 kb on + strand, within ECD_03691at 3892.049 kb on - strand, within ECD_03691at 3892.049 kb on - strand, within ECD_03691at 3892.082 kb on + strand, within ECD_03691at 3892.083 kb on - strand, within ECD_03691at 3892.083 kb on - strand, within ECD_03691at 3892.084 kb on + strand, within ECD_03691at 3892.084 kb on + strand, within ECD_03691at 3892.084 kb on + strand, within ECD_03691at 3892.085 kb on - strand, within ECD_03691at 3892.085 kb on - strand, within ECD_03691at 3892.152 kb on + strandat 3892.227 kb on + strandat 3892.229 kb on + strandat 3892.229 kb on + strandat 3892.229 kb on + strandat 3892.229 kb on + strandat 3892.229 kb on + strandat 3892.229 kb on + strandat 3892.230 kb on - strandat 3892.300 kb on + strandat 3892.301 kb on - strandat 3892.350 kb on + strandat 3892.350 kb on + strandat 3892.372 kb on + strandat 3892.372 kb on + strandat 3892.372 kb on + strandat 3892.406 kb on + strandat 3892.406 kb on + strandat 3892.442 kb on + strandat 3892.464 kb on + strandat 3892.522 kb on - strandat 3892.571 kb on - strandat 3892.576 kb on - strandat 3892.877 kb on + strand, within ECD_03692at 3892.877 kb on + strand, within ECD_03692at 3892.877 kb on + strand, within ECD_03692at 3892.877 kb on + strand, within ECD_03692at 3892.878 kb on - strand, within ECD_03692at 3892.878 kb on - strand, within ECD_03692at 3892.878 kb on - strand, within ECD_03692at 3892.902 kb on - strand, within ECD_03692at 3892.939 kb on - strand, within ECD_03692at 3892.939 kb on - strand, within ECD_03692at 3892.970 kb on - strand, within ECD_03692at 3893.045 kb on + strand, within ECD_03692at 3893.046 kb on - strand, within ECD_03692at 3893.046 kb on - strand, within ECD_03692at 3893.049 kb on + strand, within ECD_03692at 3893.049 kb on + strand, within ECD_03692at 3893.049 kb on + strand, within ECD_03692at 3893.049 kb on + strand, within ECD_03692at 3893.081 kb on + strand, within ECD_03692at 3893.081 kb on + strand, within ECD_03692at 3893.106 kb on + strand, within ECD_03692at 3893.106 kb on + strand, within ECD_03692at 3893.106 kb on + strand, within ECD_03692at 3893.107 kb on - strand, within ECD_03692at 3893.208 kb on - strand, within ECD_03692at 3893.336 kb on + strand, within ECD_03692at 3893.692 kb on + strand, within ECD_03693at 3893.983 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
remove
3,891,599 - ECD_03691 0.18 -0.1
3,891,663 - ECD_03691 0.26 -0.3
3,891,714 - ECD_03691 0.33 -0.3
3,891,727 - ECD_03691 0.35 +0.2
3,891,832 + ECD_03691 0.48 +0.5
3,891,832 + ECD_03691 0.48 +0.6
3,891,833 - ECD_03691 0.48 -0.3
3,891,833 - ECD_03691 0.48 +0.4
3,891,833 - ECD_03691 0.48 +0.4
3,891,833 - ECD_03691 0.48 -0.5
3,891,917 - ECD_03691 0.59 +0.2
3,891,934 + ECD_03691 0.62 -0.0
3,891,934 + ECD_03691 0.62 +0.0
3,891,935 - ECD_03691 0.62 +0.5
3,891,946 + ECD_03691 0.63 +1.4
3,891,946 + ECD_03691 0.63 -0.8
3,891,946 + ECD_03691 0.63 +0.8
3,891,947 - ECD_03691 0.63 +0.6
3,891,947 - ECD_03691 0.63 -0.1
3,891,986 + ECD_03691 0.68 +0.9
3,892,012 - ECD_03691 0.72 -0.8
3,892,048 + ECD_03691 0.77 -0.2
3,892,049 - ECD_03691 0.77 -0.9
3,892,049 - ECD_03691 0.77 +0.2
3,892,082 + ECD_03691 0.81 +0.9
3,892,083 - ECD_03691 0.81 +0.8
3,892,083 - ECD_03691 0.81 +0.1
3,892,084 + ECD_03691 0.81 -0.1
3,892,084 + ECD_03691 0.81 -0.1
3,892,084 + ECD_03691 0.81 -0.6
3,892,085 - ECD_03691 0.81 -0.4
3,892,085 - ECD_03691 0.81 +0.1
3,892,152 + +0.5
3,892,227 + -1.4
3,892,229 + -0.5
3,892,229 + -3.9
3,892,229 + -0.7
3,892,229 + +0.0
3,892,229 + -0.3
3,892,229 + +0.5
3,892,230 - +0.1
3,892,300 + +0.5
3,892,301 - -0.5
3,892,350 + +0.1
3,892,350 + +0.5
3,892,372 + -0.8
3,892,372 + +0.2
3,892,372 + +0.5
3,892,406 + +0.2
3,892,406 + -0.1
3,892,442 + -0.3
3,892,464 + -1.3
3,892,522 - -0.8
3,892,571 - -1.7
3,892,576 - -1.8
3,892,877 + ECD_03692 0.30 -1.5
3,892,877 + ECD_03692 0.30 -3.0
3,892,877 + ECD_03692 0.30 -2.1
3,892,877 + ECD_03692 0.30 -4.0
3,892,878 - ECD_03692 0.30 -1.3
3,892,878 - ECD_03692 0.30 -2.9
3,892,878 - ECD_03692 0.30 -1.5
3,892,902 - ECD_03692 0.32 -1.8
3,892,939 - ECD_03692 0.36 -2.2
3,892,939 - ECD_03692 0.36 -1.1
3,892,970 - ECD_03692 0.39 -1.5
3,893,045 + ECD_03692 0.47 -1.2
3,893,046 - ECD_03692 0.47 -1.9
3,893,046 - ECD_03692 0.47 -2.2
3,893,049 + ECD_03692 0.48 -0.9
3,893,049 + ECD_03692 0.48 -2.3
3,893,049 + ECD_03692 0.48 -1.9
3,893,049 + ECD_03692 0.48 -2.2
3,893,081 + ECD_03692 0.51 -1.8
3,893,081 + ECD_03692 0.51 -2.5
3,893,106 + ECD_03692 0.54 -2.7
3,893,106 + ECD_03692 0.54 -0.3
3,893,106 + ECD_03692 0.54 -1.7
3,893,107 - ECD_03692 0.54 -0.6
3,893,208 - ECD_03692 0.64 -2.7
3,893,336 + ECD_03692 0.78 -1.4
3,893,692 + ECD_03693 0.25 -0.5
3,893,983 - -0.7

Or see this region's nucleotide sequence