Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01571 and ECD_01572 are separated by 10 nucleotides ECD_01572 and ECD_01573 are separated by 523 nucleotides
ECD_01571: ECD_01571 - pyridine nucleotide transhydrogenase, beta subunit, at 1,620,169 to 1,621,557
_01571
ECD_01572: ECD_01572 - pyridine nucleotide transhydrogenase, alpha subunit, at 1,621,568 to 1,623,100
_01572
ECD_01573: ECD_01573 - DUF1471 family periplasmic protein, at 1,623,624 to 1,624,568
_01573
Position (kb)
1621
1622
1623
1624 Strain fitness (log2 ratio)
-2
-1
0
1 at 1620.784 kb on - strand, within ECD_01571 at 1620.784 kb on - strand, within ECD_01571 at 1620.856 kb on - strand, within ECD_01571 at 1621.285 kb on - strand, within ECD_01571 at 1621.530 kb on - strand at 1621.540 kb on - strand at 1621.558 kb on - strand at 1621.751 kb on - strand, within ECD_01572 at 1622.221 kb on - strand, within ECD_01572 at 1622.221 kb on - strand, within ECD_01572 at 1622.304 kb on - strand, within ECD_01572 at 1622.799 kb on - strand, within ECD_01572 at 1622.918 kb on - strand, within ECD_01572 at 1623.087 kb on - strand at 1623.123 kb on - strand at 1623.591 kb on + strand at 1623.742 kb on + strand, within ECD_01573 at 1623.742 kb on + strand, within ECD_01573 at 1623.761 kb on + strand, within ECD_01573
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 1,620,784 - ECD_01571 0.44 +0.5 1,620,784 - ECD_01571 0.44 +0.3 1,620,856 - ECD_01571 0.49 -1.2 1,621,285 - ECD_01571 0.80 -2.6 1,621,530 - +0.1 1,621,540 - +0.1 1,621,558 - +1.6 1,621,751 - ECD_01572 0.12 +0.5 1,622,221 - ECD_01572 0.43 +1.2 1,622,221 - ECD_01572 0.43 +0.7 1,622,304 - ECD_01572 0.48 +0.1 1,622,799 - ECD_01572 0.80 -1.3 1,622,918 - ECD_01572 0.88 +0.2 1,623,087 - -0.6 1,623,123 - +0.1 1,623,591 + +1.6 1,623,742 + ECD_01573 0.12 +1.0 1,623,742 + ECD_01573 0.12 +1.3 1,623,761 + ECD_01573 0.14 +0.1
Or see this region's nucleotide sequence