Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04256 and ECD_04257 are separated by 257 nucleotides ECD_04257 and ECD_04258 are separated by 126 nucleotides
ECD_04256: ECD_04256 - DUF3029 family protein, putative glycine radical enzyme, at 4,533,890 to 4,535,440
_04256
ECD_04257: ECD_04257 - 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked, at 4,535,698 to 4,536,477
_04257
ECD_04258: ECD_04258 - thymidine phosphorylase, at 4,536,604 to 4,537,926
_04258
Position (kb)
4535
4536
4537 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4534.731 kb on + strand, within ECD_04256 at 4534.969 kb on + strand, within ECD_04256 at 4535.015 kb on + strand, within ECD_04256 at 4535.114 kb on + strand, within ECD_04256 at 4535.115 kb on - strand, within ECD_04256 at 4535.215 kb on - strand, within ECD_04256 at 4535.264 kb on - strand, within ECD_04256 at 4535.478 kb on + strand at 4535.479 kb on - strand at 4535.479 kb on - strand at 4535.569 kb on + strand at 4535.570 kb on - strand at 4535.588 kb on - strand at 4535.591 kb on + strand at 4535.613 kb on - strand at 4535.783 kb on + strand, within ECD_04257 at 4535.784 kb on - strand, within ECD_04257 at 4535.833 kb on - strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.838 kb on + strand, within ECD_04257 at 4535.839 kb on - strand, within ECD_04257 at 4535.839 kb on - strand, within ECD_04257 at 4535.839 kb on - strand, within ECD_04257 at 4535.843 kb on - strand, within ECD_04257 at 4535.910 kb on + strand, within ECD_04257 at 4536.072 kb on + strand, within ECD_04257 at 4536.098 kb on + strand, within ECD_04257 at 4536.099 kb on - strand, within ECD_04257 at 4536.456 kb on + strand at 4536.457 kb on - strand at 4536.472 kb on + strand at 4536.473 kb on - strand at 4536.475 kb on + strand at 4536.475 kb on + strand at 4536.475 kb on + strand at 4536.475 kb on + strand at 4536.475 kb on + strand at 4536.476 kb on - strand at 4536.476 kb on - strand at 4536.476 kb on - strand at 4536.479 kb on + strand at 4536.479 kb on + strand at 4536.480 kb on - strand at 4536.527 kb on + strand at 4536.527 kb on + strand at 4536.527 kb on + strand at 4536.853 kb on - strand, within ECD_04258 at 4536.853 kb on - strand, within ECD_04258 at 4536.925 kb on + strand, within ECD_04258 at 4536.925 kb on + strand, within ECD_04258 at 4536.928 kb on - strand, within ECD_04258 at 4536.961 kb on - strand, within ECD_04258 at 4537.042 kb on - strand, within ECD_04258 at 4537.120 kb on - strand, within ECD_04258 at 4537.234 kb on - strand, within ECD_04258 at 4537.244 kb on - strand, within ECD_04258 at 4537.244 kb on - strand, within ECD_04258 at 4537.455 kb on + strand, within ECD_04258 at 4537.455 kb on + strand, within ECD_04258 at 4537.455 kb on + strand, within ECD_04258 at 4537.456 kb on - strand, within ECD_04258 at 4537.456 kb on - strand, within ECD_04258
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 4,534,731 + ECD_04256 0.54 -0.2 4,534,969 + ECD_04256 0.70 -0.5 4,535,015 + ECD_04256 0.73 -1.1 4,535,114 + ECD_04256 0.79 -0.6 4,535,115 - ECD_04256 0.79 +0.1 4,535,215 - ECD_04256 0.85 +1.1 4,535,264 - ECD_04256 0.89 -0.3 4,535,478 + +0.6 4,535,479 - +0.4 4,535,479 - +0.1 4,535,569 + +0.9 4,535,570 - +0.9 4,535,588 - -2.4 4,535,591 + -0.3 4,535,613 - +0.4 4,535,783 + ECD_04257 0.11 +0.4 4,535,784 - ECD_04257 0.11 +0.3 4,535,833 - ECD_04257 0.17 -0.2 4,535,838 + ECD_04257 0.18 -1.3 4,535,838 + ECD_04257 0.18 -1.9 4,535,838 + ECD_04257 0.18 -1.8 4,535,838 + ECD_04257 0.18 -0.4 4,535,838 + ECD_04257 0.18 +0.9 4,535,839 - ECD_04257 0.18 +0.8 4,535,839 - ECD_04257 0.18 +0.4 4,535,839 - ECD_04257 0.18 -1.0 4,535,843 - ECD_04257 0.19 -0.4 4,535,910 + ECD_04257 0.27 -0.0 4,536,072 + ECD_04257 0.48 -1.1 4,536,098 + ECD_04257 0.51 -0.3 4,536,099 - ECD_04257 0.51 +0.6 4,536,456 + +0.9 4,536,457 - -1.4 4,536,472 + +0.4 4,536,473 - +0.7 4,536,475 + +0.2 4,536,475 + -1.4 4,536,475 + -0.2 4,536,475 + +0.7 4,536,475 + +0.2 4,536,476 - -0.1 4,536,476 - +1.6 4,536,476 - -1.1 4,536,479 + +0.2 4,536,479 + -0.4 4,536,480 - -1.4 4,536,527 + +0.1 4,536,527 + +0.8 4,536,527 + +0.1 4,536,853 - ECD_04258 0.19 -1.1 4,536,853 - ECD_04258 0.19 -0.8 4,536,925 + ECD_04258 0.24 +0.2 4,536,925 + ECD_04258 0.24 -0.0 4,536,928 - ECD_04258 0.24 +0.4 4,536,961 - ECD_04258 0.27 -0.2 4,537,042 - ECD_04258 0.33 -0.1 4,537,120 - ECD_04258 0.39 -0.1 4,537,234 - ECD_04258 0.48 +0.8 4,537,244 - ECD_04258 0.48 -0.7 4,537,244 - ECD_04258 0.48 +1.9 4,537,455 + ECD_04258 0.64 -0.2 4,537,455 + ECD_04258 0.64 -0.7 4,537,455 + ECD_04258 0.64 +0.4 4,537,456 - ECD_04258 0.64 -0.1 4,537,456 - ECD_04258 0.64 -0.4
Or see this region's nucleotide sequence