Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04133 and ECD_04134 are separated by 216 nucleotides ECD_04134 and ECD_04135 are separated by 3 nucleotides
ECD_04133: ECD_04133 - L-idonate 5-dehydrogenase, NAD-binding, at 4,404,968 to 4,405,999
_04133
ECD_04134: ECD_04134 - D-gluconate kinase, thermosensitive, at 4,406,216 to 4,406,779
_04134
ECD_04135: ECD_04135 - broad specificity NADPH-dependent aldehyde reductase, Zn-containing, at 4,406,783 to 4,407,802
_04135
Position (kb)
4406
4407 Strain fitness (log2 ratio)
-1
0
1
2 at 4405.249 kb on + strand, within ECD_04133 at 4405.344 kb on - strand, within ECD_04133 at 4405.478 kb on - strand, within ECD_04133 at 4405.478 kb on - strand, within ECD_04133 at 4405.482 kb on - strand, within ECD_04133 at 4405.496 kb on + strand, within ECD_04133 at 4405.612 kb on + strand, within ECD_04133 at 4405.787 kb on - strand, within ECD_04133 at 4405.932 kb on - strand at 4406.039 kb on - strand at 4406.048 kb on + strand at 4406.049 kb on - strand at 4406.049 kb on - strand at 4406.096 kb on - strand at 4406.213 kb on + strand at 4406.529 kb on + strand, within ECD_04134 at 4406.540 kb on + strand, within ECD_04134 at 4406.601 kb on + strand, within ECD_04134 at 4406.736 kb on + strand at 4406.736 kb on + strand at 4406.821 kb on + strand at 4406.920 kb on + strand, within ECD_04135 at 4406.920 kb on + strand, within ECD_04135 at 4406.921 kb on - strand, within ECD_04135 at 4406.984 kb on - strand, within ECD_04135 at 4406.984 kb on - strand, within ECD_04135 at 4407.042 kb on + strand, within ECD_04135 at 4407.202 kb on + strand, within ECD_04135 at 4407.208 kb on + strand, within ECD_04135 at 4407.249 kb on - strand, within ECD_04135 at 4407.249 kb on - strand, within ECD_04135 at 4407.249 kb on - strand, within ECD_04135 at 4407.307 kb on + strand, within ECD_04135 at 4407.520 kb on + strand, within ECD_04135 at 4407.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 4,405,249 + ECD_04133 0.27 -0.6 4,405,344 - ECD_04133 0.36 +0.4 4,405,478 - ECD_04133 0.49 +0.2 4,405,478 - ECD_04133 0.49 +0.2 4,405,482 - ECD_04133 0.50 +0.9 4,405,496 + ECD_04133 0.51 -0.9 4,405,612 + ECD_04133 0.62 -0.2 4,405,787 - ECD_04133 0.79 +1.7 4,405,932 - -1.0 4,406,039 - +0.7 4,406,048 + -1.0 4,406,049 - +0.6 4,406,049 - +0.0 4,406,096 - +1.5 4,406,213 + -0.1 4,406,529 + ECD_04134 0.55 -1.4 4,406,540 + ECD_04134 0.57 -0.6 4,406,601 + ECD_04134 0.68 -0.9 4,406,736 + -0.5 4,406,736 + +0.5 4,406,821 + +0.4 4,406,920 + ECD_04135 0.13 -0.4 4,406,920 + ECD_04135 0.13 +0.2 4,406,921 - ECD_04135 0.14 -0.5 4,406,984 - ECD_04135 0.20 +2.3 4,406,984 - ECD_04135 0.20 +0.3 4,407,042 + ECD_04135 0.25 +0.0 4,407,202 + ECD_04135 0.41 -0.1 4,407,208 + ECD_04135 0.42 +1.3 4,407,249 - ECD_04135 0.46 -0.2 4,407,249 - ECD_04135 0.46 -0.4 4,407,249 - ECD_04135 0.46 -0.1 4,407,307 + ECD_04135 0.51 +0.1 4,407,520 + ECD_04135 0.72 +1.6 4,407,748 - -0.3
Or see this region's nucleotide sequence