Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03908 and ECD_03909 are separated by 242 nucleotides ECD_03909 and ECD_03910 are separated by 480 nucleotides
ECD_03908: ECD_03908 - maltose outer membrane porin (maltoporin), at 4,155,343 to 4,156,683
_03908
ECD_03909: ECD_03909 - maltose regulon periplasmic protein, at 4,156,926 to 4,157,846
_03909
ECD_03910: ECD_03910 - hypothetical protein, at 4,158,327 to 4,159,655
_03910
Position (kb)
4156
4157
4158 Strain fitness (log2 ratio)
-2
-1
0
1 at 4155.977 kb on + strand, within ECD_03908 at 4155.977 kb on + strand, within ECD_03908 at 4155.977 kb on + strand, within ECD_03908 at 4155.978 kb on - strand, within ECD_03908 at 4155.978 kb on - strand, within ECD_03908 at 4156.022 kb on - strand, within ECD_03908 at 4156.074 kb on + strand, within ECD_03908 at 4156.117 kb on + strand, within ECD_03908 at 4156.279 kb on + strand, within ECD_03908 at 4156.279 kb on + strand, within ECD_03908 at 4156.279 kb on + strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.287 kb on + strand, within ECD_03908 at 4156.288 kb on - strand, within ECD_03908 at 4156.288 kb on - strand, within ECD_03908 at 4156.291 kb on + strand, within ECD_03908 at 4156.291 kb on + strand, within ECD_03908 at 4156.291 kb on + strand, within ECD_03908 at 4156.292 kb on - strand, within ECD_03908 at 4156.292 kb on - strand, within ECD_03908 at 4156.292 kb on - strand, within ECD_03908 at 4156.292 kb on - strand, within ECD_03908 at 4156.357 kb on + strand, within ECD_03908 at 4156.358 kb on - strand, within ECD_03908 at 4156.522 kb on + strand, within ECD_03908 at 4156.555 kb on + strand at 4156.556 kb on - strand at 4156.572 kb on + strand at 4156.573 kb on - strand at 4156.681 kb on + strand at 4156.684 kb on + strand at 4156.758 kb on + strand at 4156.767 kb on + strand at 4156.768 kb on - strand at 4156.768 kb on - strand at 4156.804 kb on - strand at 4156.994 kb on + strand at 4157.009 kb on + strand at 4157.010 kb on - strand at 4157.010 kb on - strand at 4157.010 kb on - strand at 4157.013 kb on + strand at 4157.013 kb on + strand at 4157.013 kb on + strand at 4157.014 kb on - strand at 4157.014 kb on - strand at 4157.014 kb on - strand at 4157.172 kb on + strand, within ECD_03909 at 4157.466 kb on + strand, within ECD_03909 at 4157.466 kb on + strand, within ECD_03909 at 4157.466 kb on + strand, within ECD_03909 at 4157.522 kb on + strand, within ECD_03909 at 4157.522 kb on + strand, within ECD_03909 at 4157.581 kb on + strand, within ECD_03909 at 4157.590 kb on + strand, within ECD_03909 at 4157.591 kb on - strand, within ECD_03909 at 4157.715 kb on - strand, within ECD_03909 at 4157.715 kb on - strand, within ECD_03909 at 4157.717 kb on + strand, within ECD_03909 at 4157.756 kb on + strand at 4157.844 kb on + strand at 4157.943 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 4,155,977 + ECD_03908 0.47 -0.7 4,155,977 + ECD_03908 0.47 -0.2 4,155,977 + ECD_03908 0.47 +0.1 4,155,978 - ECD_03908 0.47 +0.3 4,155,978 - ECD_03908 0.47 +0.4 4,156,022 - ECD_03908 0.51 -0.1 4,156,074 + ECD_03908 0.55 -0.1 4,156,117 + ECD_03908 0.58 +0.2 4,156,279 + ECD_03908 0.70 -0.4 4,156,279 + ECD_03908 0.70 +0.4 4,156,279 + ECD_03908 0.70 +0.5 4,156,280 - ECD_03908 0.70 +0.8 4,156,280 - ECD_03908 0.70 +0.8 4,156,280 - ECD_03908 0.70 +0.3 4,156,280 - ECD_03908 0.70 -1.5 4,156,280 - ECD_03908 0.70 -0.2 4,156,280 - ECD_03908 0.70 -0.5 4,156,287 + ECD_03908 0.70 -0.1 4,156,288 - ECD_03908 0.70 +0.9 4,156,288 - ECD_03908 0.70 -0.4 4,156,291 + ECD_03908 0.71 -0.4 4,156,291 + ECD_03908 0.71 +0.3 4,156,291 + ECD_03908 0.71 -0.7 4,156,292 - ECD_03908 0.71 -1.1 4,156,292 - ECD_03908 0.71 -0.6 4,156,292 - ECD_03908 0.71 +0.4 4,156,292 - ECD_03908 0.71 -0.3 4,156,357 + ECD_03908 0.76 +0.4 4,156,358 - ECD_03908 0.76 -0.1 4,156,522 + ECD_03908 0.88 -0.3 4,156,555 + -0.3 4,156,556 - -0.9 4,156,572 + -1.0 4,156,573 - -2.7 4,156,681 + +0.5 4,156,684 + -0.5 4,156,758 + -0.3 4,156,767 + +0.4 4,156,768 - +1.1 4,156,768 - +0.6 4,156,804 - +1.2 4,156,994 + +0.2 4,157,009 + -1.2 4,157,010 - +0.9 4,157,010 - -0.3 4,157,010 - -0.6 4,157,013 + -0.9 4,157,013 + +0.2 4,157,013 + +0.5 4,157,014 - +0.9 4,157,014 - +0.9 4,157,014 - +0.4 4,157,172 + ECD_03909 0.27 -0.4 4,157,466 + ECD_03909 0.59 -0.6 4,157,466 + ECD_03909 0.59 -1.6 4,157,466 + ECD_03909 0.59 +0.8 4,157,522 + ECD_03909 0.65 -1.8 4,157,522 + ECD_03909 0.65 -0.2 4,157,581 + ECD_03909 0.71 -0.1 4,157,590 + ECD_03909 0.72 -0.9 4,157,591 - ECD_03909 0.72 -0.2 4,157,715 - ECD_03909 0.86 -0.7 4,157,715 - ECD_03909 0.86 -0.2 4,157,717 + ECD_03909 0.86 +0.2 4,157,756 + -1.0 4,157,844 + -0.4 4,157,943 - -0.0
Or see this region's nucleotide sequence