Strain Fitness in Escherichia coli BL21 around ECD_03715

Experiment: Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03714 and ECD_03715 are separated by 94 nucleotidesECD_03715 and ECD_03716 are separated by 5 nucleotidesECD_03716 and ECD_03717 are separated by 256 nucleotides ECD_03714: ECD_03714 - hypothetical protein, at 3,913,274 to 3,914,833 _03714 ECD_03715: ECD_03715 - hypothetical protein, at 3,914,928 to 3,915,788 _03715 ECD_03716: ECD_03716 - hypothetical protein, at 3,915,794 to 3,916,462 _03716 ECD_03717: ECD_03717 - putative carboxymethylenebutenolidase, at 3,916,719 to 3,917,528 _03717 Position (kb) 3914 3915 3916Strain fitness (log2 ratio) -2 -1 0 1 2at 3913.948 kb on + strand, within ECD_03714at 3914.079 kb on - strand, within ECD_03714at 3914.111 kb on + strand, within ECD_03714at 3914.111 kb on + strand, within ECD_03714at 3914.112 kb on - strand, within ECD_03714at 3914.186 kb on - strand, within ECD_03714at 3914.303 kb on - strand, within ECD_03714at 3914.387 kb on - strand, within ECD_03714at 3914.437 kb on + strand, within ECD_03714at 3914.542 kb on + strand, within ECD_03714at 3914.597 kb on + strand, within ECD_03714at 3914.618 kb on - strand, within ECD_03714at 3914.618 kb on - strand, within ECD_03714at 3914.618 kb on - strand, within ECD_03714at 3914.839 kb on + strandat 3914.891 kb on + strandat 3914.982 kb on + strandat 3914.982 kb on + strandat 3914.982 kb on + strandat 3914.982 kb on + strandat 3914.983 kb on - strandat 3914.983 kb on - strandat 3915.070 kb on - strand, within ECD_03715at 3915.118 kb on + strand, within ECD_03715at 3915.118 kb on + strand, within ECD_03715at 3915.233 kb on - strand, within ECD_03715at 3915.244 kb on + strand, within ECD_03715at 3915.244 kb on + strand, within ECD_03715at 3915.245 kb on - strand, within ECD_03715at 3915.245 kb on - strand, within ECD_03715at 3915.273 kb on - strand, within ECD_03715at 3915.333 kb on + strand, within ECD_03715at 3915.384 kb on - strand, within ECD_03715at 3915.384 kb on - strand, within ECD_03715at 3915.384 kb on - strand, within ECD_03715at 3915.384 kb on - strand, within ECD_03715at 3915.550 kb on - strand, within ECD_03715at 3915.637 kb on + strand, within ECD_03715at 3915.638 kb on - strand, within ECD_03715at 3915.638 kb on - strand, within ECD_03715at 3915.690 kb on + strand, within ECD_03715at 3915.691 kb on - strand, within ECD_03715at 3915.702 kb on - strand, within ECD_03715at 3915.710 kb on + strandat 3915.711 kb on - strandat 3915.720 kb on + strandat 3915.720 kb on + strandat 3915.720 kb on + strandat 3915.783 kb on + strandat 3915.814 kb on + strandat 3915.880 kb on - strand, within ECD_03716at 3915.937 kb on - strand, within ECD_03716at 3915.937 kb on - strand, within ECD_03716at 3915.988 kb on + strand, within ECD_03716at 3915.988 kb on + strand, within ECD_03716at 3916.001 kb on + strand, within ECD_03716at 3916.001 kb on + strand, within ECD_03716at 3916.001 kb on + strand, within ECD_03716at 3916.002 kb on - strand, within ECD_03716at 3916.040 kb on + strand, within ECD_03716at 3916.040 kb on + strand, within ECD_03716at 3916.041 kb on - strand, within ECD_03716at 3916.041 kb on - strand, within ECD_03716at 3916.054 kb on - strand, within ECD_03716at 3916.054 kb on - strand, within ECD_03716at 3916.076 kb on - strand, within ECD_03716at 3916.224 kb on - strand, within ECD_03716at 3916.224 kb on - strand, within ECD_03716at 3916.255 kb on + strand, within ECD_03716at 3916.261 kb on + strand, within ECD_03716at 3916.261 kb on + strand, within ECD_03716at 3916.261 kb on + strand, within ECD_03716at 3916.261 kb on + strand, within ECD_03716at 3916.297 kb on + strand, within ECD_03716at 3916.297 kb on + strand, within ECD_03716at 3916.297 kb on + strand, within ECD_03716at 3916.298 kb on - strand, within ECD_03716at 3916.298 kb on - strand, within ECD_03716at 3916.298 kb on - strand, within ECD_03716at 3916.298 kb on - strand, within ECD_03716at 3916.320 kb on - strand, within ECD_03716at 3916.465 kb on + strandat 3916.465 kb on + strandat 3916.692 kb on + strandat 3916.692 kb on + strandat 3916.712 kb on + strandat 3916.712 kb on + strandat 3916.727 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.736 kb on - strandat 3916.736 kb on - strandat 3916.736 kb on - strandat 3916.736 kb on - strandat 3916.736 kb on - strandat 3916.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
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3,913,948 + ECD_03714 0.43 -1.6
3,914,079 - ECD_03714 0.52 +0.3
3,914,111 + ECD_03714 0.54 -0.0
3,914,111 + ECD_03714 0.54 -0.0
3,914,112 - ECD_03714 0.54 +1.4
3,914,186 - ECD_03714 0.58 -0.2
3,914,303 - ECD_03714 0.66 +0.0
3,914,387 - ECD_03714 0.71 +1.2
3,914,437 + ECD_03714 0.75 +1.0
3,914,542 + ECD_03714 0.81 -0.5
3,914,597 + ECD_03714 0.85 -0.7
3,914,618 - ECD_03714 0.86 +0.1
3,914,618 - ECD_03714 0.86 +0.6
3,914,618 - ECD_03714 0.86 -0.0
3,914,839 + +0.8
3,914,891 + +1.0
3,914,982 + -1.6
3,914,982 + -0.5
3,914,982 + -0.3
3,914,982 + +0.6
3,914,983 - -0.2
3,914,983 - -0.2
3,915,070 - ECD_03715 0.16 +0.5
3,915,118 + ECD_03715 0.22 +0.1
3,915,118 + ECD_03715 0.22 -0.6
3,915,233 - ECD_03715 0.35 +1.1
3,915,244 + ECD_03715 0.37 +0.0
3,915,244 + ECD_03715 0.37 +0.2
3,915,245 - ECD_03715 0.37 -0.5
3,915,245 - ECD_03715 0.37 -1.8
3,915,273 - ECD_03715 0.40 -0.3
3,915,333 + ECD_03715 0.47 +0.1
3,915,384 - ECD_03715 0.53 -0.8
3,915,384 - ECD_03715 0.53 +0.2
3,915,384 - ECD_03715 0.53 -0.4
3,915,384 - ECD_03715 0.53 +0.1
3,915,550 - ECD_03715 0.72 +0.6
3,915,637 + ECD_03715 0.82 -0.7
3,915,638 - ECD_03715 0.82 +0.8
3,915,638 - ECD_03715 0.82 +0.4
3,915,690 + ECD_03715 0.89 +1.9
3,915,691 - ECD_03715 0.89 +0.5
3,915,702 - ECD_03715 0.90 +0.6
3,915,710 + -0.2
3,915,711 - +0.8
3,915,720 + +0.9
3,915,720 + -0.5
3,915,720 + +0.3
3,915,783 + +0.5
3,915,814 + -0.2
3,915,880 - ECD_03716 0.13 +0.3
3,915,937 - ECD_03716 0.21 -0.4
3,915,937 - ECD_03716 0.21 -0.9
3,915,988 + ECD_03716 0.29 -1.2
3,915,988 + ECD_03716 0.29 -1.7
3,916,001 + ECD_03716 0.31 -0.3
3,916,001 + ECD_03716 0.31 +0.5
3,916,001 + ECD_03716 0.31 -1.2
3,916,002 - ECD_03716 0.31 -0.2
3,916,040 + ECD_03716 0.37 -1.5
3,916,040 + ECD_03716 0.37 +0.1
3,916,041 - ECD_03716 0.37 -1.2
3,916,041 - ECD_03716 0.37 -0.7
3,916,054 - ECD_03716 0.39 -0.6
3,916,054 - ECD_03716 0.39 -0.7
3,916,076 - ECD_03716 0.42 -0.2
3,916,224 - ECD_03716 0.64 +0.6
3,916,224 - ECD_03716 0.64 +1.9
3,916,255 + ECD_03716 0.69 -1.5
3,916,261 + ECD_03716 0.70 -0.2
3,916,261 + ECD_03716 0.70 -0.9
3,916,261 + ECD_03716 0.70 +1.9
3,916,261 + ECD_03716 0.70 +0.4
3,916,297 + ECD_03716 0.75 -0.0
3,916,297 + ECD_03716 0.75 +0.3
3,916,297 + ECD_03716 0.75 +0.4
3,916,298 - ECD_03716 0.75 -0.3
3,916,298 - ECD_03716 0.75 +0.3
3,916,298 - ECD_03716 0.75 +0.2
3,916,298 - ECD_03716 0.75 +0.9
3,916,320 - ECD_03716 0.79 -0.5
3,916,465 + -0.1
3,916,465 + -0.2
3,916,692 + +0.5
3,916,692 + +0.2
3,916,712 + -0.2
3,916,712 + +0.7
3,916,727 + -0.7
3,916,735 + +0.3
3,916,735 + +0.2
3,916,735 + +0.3
3,916,735 + -0.4
3,916,735 + -0.5
3,916,735 + -0.4
3,916,735 + -0.2
3,916,735 + -1.3
3,916,736 - +0.1
3,916,736 - +0.2
3,916,736 - -0.2
3,916,736 - +0.2
3,916,736 - +0.3
3,916,736 - -0.1

Or see this region's nucleotide sequence