Strain Fitness in Escherichia coli BL21 around ECD_03530

Experiment: Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03526 and ECD_03527 are separated by 127 nucleotidesECD_03527 and ECD_03530 are separated by 566 nucleotidesECD_03530 and ECD_03531 are separated by 27 nucleotides ECD_03526: ECD_03526 - hypothetical protein, at 3,715,242 to 3,715,397 _03526 ECD_03527: ECD_03527 - hypothetical protein, at 3,715,525 to 3,715,827 _03527 ECD_03530: ECD_03530 - hypothetical protein, at 3,716,394 to 3,716,648 _03530 ECD_03531: ECD_03531 - hypothetical protein, at 3,716,676 to 3,720,173 _03531 Position (kb) 3716 3717Strain fitness (log2 ratio) -2 -1 0 1 2at 3715.419 kb on + strandat 3715.420 kb on - strandat 3715.420 kb on - strandat 3715.420 kb on - strandat 3715.421 kb on + strandat 3715.421 kb on + strandat 3715.422 kb on - strandat 3715.423 kb on + strandat 3715.424 kb on - strandat 3715.424 kb on - strandat 3715.429 kb on + strandat 3715.429 kb on + strandat 3715.430 kb on - strandat 3715.430 kb on - strandat 3715.430 kb on - strandat 3715.437 kb on - strandat 3715.437 kb on - strandat 3715.439 kb on + strandat 3715.440 kb on - strandat 3715.440 kb on - strandat 3715.444 kb on - strandat 3715.444 kb on - strandat 3715.445 kb on + strandat 3715.445 kb on + strandat 3715.446 kb on - strandat 3715.446 kb on - strandat 3715.458 kb on + strandat 3715.458 kb on + strandat 3715.459 kb on - strandat 3715.459 kb on - strandat 3715.459 kb on - strandat 3715.459 kb on - strandat 3715.470 kb on + strandat 3715.475 kb on + strandat 3715.476 kb on - strandat 3715.476 kb on - strandat 3715.478 kb on + strandat 3715.478 kb on + strandat 3715.478 kb on + strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.498 kb on - strandat 3715.498 kb on - strandat 3715.498 kb on - strandat 3715.508 kb on + strandat 3715.508 kb on + strandat 3715.508 kb on + strandat 3715.551 kb on + strandat 3715.551 kb on + strandat 3715.555 kb on + strandat 3715.556 kb on - strand, within ECD_03527at 3715.560 kb on + strand, within ECD_03527at 3715.560 kb on + strand, within ECD_03527at 3715.641 kb on + strand, within ECD_03527at 3715.647 kb on + strand, within ECD_03527at 3715.648 kb on - strand, within ECD_03527at 3715.648 kb on - strand, within ECD_03527at 3715.648 kb on - strand, within ECD_03527at 3715.648 kb on - strand, within ECD_03527at 3715.648 kb on - strand, within ECD_03527at 3715.714 kb on + strand, within ECD_03527at 3715.715 kb on - strand, within ECD_03527at 3715.718 kb on + strand, within ECD_03527at 3715.719 kb on - strand, within ECD_03527at 3715.719 kb on - strand, within ECD_03527at 3715.749 kb on + strand, within ECD_03527at 3715.750 kb on - strand, within ECD_03527at 3715.785 kb on - strand, within ECD_03527at 3715.791 kb on - strand, within ECD_03527at 3715.804 kb on - strandat 3715.816 kb on - strandat 3715.826 kb on - strandat 3715.831 kb on + strandat 3715.832 kb on - strandat 3715.832 kb on - strandat 3715.832 kb on - strandat 3715.832 kb on - strandat 3715.907 kb on - strandat 3715.942 kb on + strandat 3715.948 kb on + strandat 3716.017 kb on + strandat 3716.018 kb on - strandat 3716.049 kb on - strandat 3716.119 kb on + strandat 3716.120 kb on - strandat 3716.125 kb on + strandat 3716.125 kb on + strandat 3716.206 kb on - strandat 3716.249 kb on - strandat 3716.276 kb on + strandat 3716.277 kb on - strandat 3716.338 kb on - strandat 3716.391 kb on - strandat 3716.400 kb on + strandat 3716.494 kb on + strand, within ECD_03530at 3716.875 kb on + strandat 3717.018 kb on - strandat 3717.163 kb on + strand, within ECD_03531

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
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3,715,419 + +0.5
3,715,420 - +0.1
3,715,420 - -1.1
3,715,420 - +0.2
3,715,421 + +1.8
3,715,421 + +1.8
3,715,422 - +0.1
3,715,423 + +0.1
3,715,424 - +0.4
3,715,424 - -0.3
3,715,429 + -0.1
3,715,429 + -0.5
3,715,430 - -0.4
3,715,430 - -0.4
3,715,430 - -0.1
3,715,437 - -0.2
3,715,437 - -0.6
3,715,439 + -0.4
3,715,440 - -1.0
3,715,440 - -0.2
3,715,444 - -0.2
3,715,444 - +0.5
3,715,445 + +0.6
3,715,445 + +0.1
3,715,446 - -0.6
3,715,446 - +0.4
3,715,458 + -0.8
3,715,458 + +1.0
3,715,459 - -0.0
3,715,459 - -0.0
3,715,459 - +0.1
3,715,459 - +0.1
3,715,470 + -0.4
3,715,475 + -2.3
3,715,476 - +1.8
3,715,476 - -0.0
3,715,478 + -0.4
3,715,478 + -0.8
3,715,478 + -0.4
3,715,479 - +0.4
3,715,479 - +0.6
3,715,479 - -0.6
3,715,479 - +0.4
3,715,479 - -0.4
3,715,479 - -0.2
3,715,479 - +0.4
3,715,498 - -0.5
3,715,498 - -0.0
3,715,498 - +0.1
3,715,508 + +0.1
3,715,508 + -0.3
3,715,508 + -0.5
3,715,551 + +0.6
3,715,551 + +0.3
3,715,555 + -1.0
3,715,556 - ECD_03527 0.10 +0.8
3,715,560 + ECD_03527 0.12 +0.2
3,715,560 + ECD_03527 0.12 -0.3
3,715,641 + ECD_03527 0.38 -0.3
3,715,647 + ECD_03527 0.40 -0.5
3,715,648 - ECD_03527 0.41 -0.2
3,715,648 - ECD_03527 0.41 -0.1
3,715,648 - ECD_03527 0.41 +1.0
3,715,648 - ECD_03527 0.41 -0.7
3,715,648 - ECD_03527 0.41 -0.4
3,715,714 + ECD_03527 0.62 +1.7
3,715,715 - ECD_03527 0.63 +0.1
3,715,718 + ECD_03527 0.64 +0.0
3,715,719 - ECD_03527 0.64 +0.4
3,715,719 - ECD_03527 0.64 +0.1
3,715,749 + ECD_03527 0.74 +0.7
3,715,750 - ECD_03527 0.74 -0.2
3,715,785 - ECD_03527 0.86 -0.2
3,715,791 - ECD_03527 0.88 -0.9
3,715,804 - +0.6
3,715,816 - -0.5
3,715,826 - -1.4
3,715,831 + +0.5
3,715,832 - -0.8
3,715,832 - +0.2
3,715,832 - +0.1
3,715,832 - -1.5
3,715,907 - -0.1
3,715,942 + +0.3
3,715,948 + +0.0
3,716,017 + -0.9
3,716,018 - +0.1
3,716,049 - +0.4
3,716,119 + +0.9
3,716,120 - +2.2
3,716,125 + -0.0
3,716,125 + -0.6
3,716,206 - +0.7
3,716,249 - -0.4
3,716,276 + +0.2
3,716,277 - -0.5
3,716,338 - -0.2
3,716,391 - -0.7
3,716,400 + +0.5
3,716,494 + ECD_03530 0.39 -0.9
3,716,875 + +0.7
3,717,018 - +0.7
3,717,163 + ECD_03531 0.14 +1.0

Or see this region's nucleotide sequence