Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03085 and ECD_03086 are separated by 121 nucleotides ECD_03086 and ECD_03087 are separated by 379 nucleotides
ECD_03085: ECD_03085 - N-acetylneuraminate lyase, at 3,233,846 to 3,234,739
_03085
ECD_03086: ECD_03086 - sialic acid-inducible nan operon repressor, at 3,234,861 to 3,235,652
_03086
ECD_03087: ECD_03087 - putative transporter, at 3,236,032 to 3,237,399
_03087
Position (kb)
3234
3235
3236 Strain fitness (log2 ratio)
-1
0
1
2 at 3233.957 kb on - strand, within ECD_03085 at 3233.959 kb on - strand, within ECD_03085 at 3234.111 kb on + strand, within ECD_03085 at 3234.111 kb on + strand, within ECD_03085 at 3234.111 kb on + strand, within ECD_03085 at 3234.178 kb on + strand, within ECD_03085 at 3234.180 kb on + strand, within ECD_03085 at 3234.257 kb on + strand, within ECD_03085 at 3234.258 kb on - strand, within ECD_03085 at 3234.271 kb on + strand, within ECD_03085 at 3234.272 kb on - strand, within ECD_03085 at 3234.272 kb on - strand, within ECD_03085 at 3234.272 kb on - strand, within ECD_03085 at 3234.330 kb on + strand, within ECD_03085 at 3234.330 kb on + strand, within ECD_03085 at 3234.365 kb on - strand, within ECD_03085 at 3234.411 kb on + strand, within ECD_03085 at 3234.411 kb on + strand, within ECD_03085 at 3234.411 kb on + strand, within ECD_03085 at 3234.412 kb on - strand, within ECD_03085 at 3234.412 kb on - strand, within ECD_03085 at 3234.581 kb on + strand, within ECD_03085 at 3234.612 kb on + strand, within ECD_03085 at 3234.612 kb on + strand, within ECD_03085 at 3234.613 kb on - strand, within ECD_03085 at 3234.615 kb on - strand, within ECD_03085 at 3234.744 kb on - strand at 3234.744 kb on - strand at 3234.831 kb on + strand at 3234.832 kb on - strand at 3234.833 kb on + strand at 3234.851 kb on + strand at 3234.986 kb on + strand, within ECD_03086 at 3234.998 kb on - strand, within ECD_03086 at 3235.001 kb on + strand, within ECD_03086 at 3235.272 kb on + strand, within ECD_03086 at 3235.272 kb on + strand, within ECD_03086 at 3235.273 kb on - strand, within ECD_03086 at 3235.347 kb on - strand, within ECD_03086 at 3235.393 kb on - strand, within ECD_03086 at 3235.489 kb on - strand, within ECD_03086 at 3235.489 kb on - strand, within ECD_03086 at 3235.771 kb on - strand at 3235.950 kb on - strand at 3236.043 kb on - strand at 3236.046 kb on + strand at 3236.127 kb on + strand at 3236.128 kb on - strand at 3236.157 kb on - strand at 3236.197 kb on + strand, within ECD_03087 at 3236.211 kb on + strand, within ECD_03087 at 3236.215 kb on + strand, within ECD_03087 at 3236.215 kb on + strand, within ECD_03087 at 3236.217 kb on + strand, within ECD_03087 at 3236.296 kb on + strand, within ECD_03087 at 3236.340 kb on - strand, within ECD_03087 at 3236.373 kb on + strand, within ECD_03087 at 3236.377 kb on - strand, within ECD_03087 at 3236.392 kb on + strand, within ECD_03087 at 3236.393 kb on - strand, within ECD_03087 at 3236.393 kb on - strand, within ECD_03087 at 3236.393 kb on - strand, within ECD_03087 at 3236.421 kb on + strand, within ECD_03087 at 3236.446 kb on - strand, within ECD_03087 at 3236.466 kb on - strand, within ECD_03087 at 3236.492 kb on + strand, within ECD_03087 at 3236.493 kb on - strand, within ECD_03087 at 3236.605 kb on + strand, within ECD_03087 at 3236.605 kb on + strand, within ECD_03087 at 3236.605 kb on + strand, within ECD_03087 at 3236.605 kb on + strand, within ECD_03087 at 3236.606 kb on - strand, within ECD_03087 at 3236.606 kb on - strand, within ECD_03087 at 3236.606 kb on - strand, within ECD_03087 at 3236.606 kb on - strand, within ECD_03087 at 3236.646 kb on + strand, within ECD_03087
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 3,233,957 - ECD_03085 0.12 +0.8 3,233,959 - ECD_03085 0.13 -1.5 3,234,111 + ECD_03085 0.30 +0.2 3,234,111 + ECD_03085 0.30 +0.6 3,234,111 + ECD_03085 0.30 +0.1 3,234,178 + ECD_03085 0.37 +0.5 3,234,180 + ECD_03085 0.37 +0.3 3,234,257 + ECD_03085 0.46 +0.3 3,234,258 - ECD_03085 0.46 -0.0 3,234,271 + ECD_03085 0.48 -0.0 3,234,272 - ECD_03085 0.48 -0.6 3,234,272 - ECD_03085 0.48 -0.2 3,234,272 - ECD_03085 0.48 -0.6 3,234,330 + ECD_03085 0.54 -0.3 3,234,330 + ECD_03085 0.54 +0.7 3,234,365 - ECD_03085 0.58 +0.7 3,234,411 + ECD_03085 0.63 -0.2 3,234,411 + ECD_03085 0.63 -0.3 3,234,411 + ECD_03085 0.63 -0.2 3,234,412 - ECD_03085 0.63 +0.1 3,234,412 - ECD_03085 0.63 +0.3 3,234,581 + ECD_03085 0.82 +1.7 3,234,612 + ECD_03085 0.86 +0.4 3,234,612 + ECD_03085 0.86 -1.0 3,234,613 - ECD_03085 0.86 -0.3 3,234,615 - ECD_03085 0.86 +0.5 3,234,744 - -0.4 3,234,744 - -0.3 3,234,831 + -0.6 3,234,832 - -1.5 3,234,833 + +0.2 3,234,851 + -0.3 3,234,986 + ECD_03086 0.16 +2.5 3,234,998 - ECD_03086 0.17 +1.3 3,235,001 + ECD_03086 0.18 +0.2 3,235,272 + ECD_03086 0.52 +1.0 3,235,272 + ECD_03086 0.52 +0.3 3,235,273 - ECD_03086 0.52 +1.9 3,235,347 - ECD_03086 0.61 +0.7 3,235,393 - ECD_03086 0.67 -0.7 3,235,489 - ECD_03086 0.79 -0.6 3,235,489 - ECD_03086 0.79 +1.3 3,235,771 - +1.0 3,235,950 - -0.4 3,236,043 - -0.5 3,236,046 + -0.3 3,236,127 + +0.8 3,236,128 - +1.0 3,236,157 - -0.4 3,236,197 + ECD_03087 0.12 +0.8 3,236,211 + ECD_03087 0.13 +0.5 3,236,215 + ECD_03087 0.13 +0.2 3,236,215 + ECD_03087 0.13 -0.0 3,236,217 + ECD_03087 0.14 -1.3 3,236,296 + ECD_03087 0.19 +0.8 3,236,340 - ECD_03087 0.23 -1.7 3,236,373 + ECD_03087 0.25 +0.2 3,236,377 - ECD_03087 0.25 +0.4 3,236,392 + ECD_03087 0.26 -1.2 3,236,393 - ECD_03087 0.26 -1.3 3,236,393 - ECD_03087 0.26 -0.2 3,236,393 - ECD_03087 0.26 -0.4 3,236,421 + ECD_03087 0.28 +1.2 3,236,446 - ECD_03087 0.30 +1.3 3,236,466 - ECD_03087 0.32 +0.8 3,236,492 + ECD_03087 0.34 +0.8 3,236,493 - ECD_03087 0.34 -0.6 3,236,605 + ECD_03087 0.42 +0.5 3,236,605 + ECD_03087 0.42 +0.2 3,236,605 + ECD_03087 0.42 +0.4 3,236,605 + ECD_03087 0.42 +0.7 3,236,606 - ECD_03087 0.42 -0.2 3,236,606 - ECD_03087 0.42 -0.3 3,236,606 - ECD_03087 0.42 -0.6 3,236,606 - ECD_03087 0.42 -0.6 3,236,646 + ECD_03087 0.45 -0.8
Or see this region's nucleotide sequence