Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_t00058 and ECD_03040 are separated by 14 nucleotides ECD_03040 and ECD_03041 are separated by 227 nucleotides ECD_03041 and ECD_03042 overlap by 8 nucleotides ECD_03042 and ECD_03043 are separated by 89 nucleotides
ECD_t00058: ECD_t00058 - tRNA-Leu, at 3,190,571 to 3,190,657
_t00058
ECD_03040: ECD_03040 - preprotein translocase membrane subunit, at 3,190,672 to 3,191,004
_03040
ECD_03041: ECD_03041 - phosphoglucosamine mutase, at 3,191,232 to 3,192,569
_03041
ECD_03042: ECD_03042 - 7,8-dihydropteroate synthase, at 3,192,562 to 3,193,410
_03042
ECD_03043: ECD_03043 - protease, ATP-dependent zinc-metallo, at 3,193,500 to 3,195,434
_03043
Position (kb)
3191
3192
3193 Strain fitness (log2 ratio)
-2
-1
0
1 at 3190.261 kb on + strand at 3190.358 kb on - strand at 3190.404 kb on + strand at 3190.427 kb on + strand at 3190.433 kb on + strand at 3190.433 kb on + strand at 3190.494 kb on - strand at 3190.494 kb on - strand at 3190.667 kb on - strand at 3190.667 kb on - strand at 3190.783 kb on - strand, within ECD_03040 at 3190.930 kb on - strand, within ECD_03040 at 3190.975 kb on - strand at 3190.975 kb on - strand at 3190.988 kb on - strand at 3191.001 kb on - strand at 3191.005 kb on - strand at 3191.005 kb on - strand at 3191.036 kb on - strand at 3191.222 kb on - strand at 3191.226 kb on - strand at 3191.245 kb on - strand at 3193.436 kb on - strand at 3193.479 kb on - strand at 3193.502 kb on - strand at 3193.502 kb on - strand at 3193.502 kb on - strand at 3193.502 kb on - strand at 3193.502 kb on - strand at 3193.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 3,190,261 + -0.4 3,190,358 - -0.1 3,190,404 + -0.3 3,190,427 + -0.9 3,190,433 + +0.4 3,190,433 + -0.5 3,190,494 - -1.8 3,190,494 - +0.3 3,190,667 - +0.4 3,190,667 - -0.7 3,190,783 - ECD_03040 0.33 -1.1 3,190,930 - ECD_03040 0.77 -0.3 3,190,975 - -0.2 3,190,975 - -0.7 3,190,988 - -0.1 3,191,001 - -0.8 3,191,005 - -1.6 3,191,005 - +0.1 3,191,036 - +0.9 3,191,222 - -0.1 3,191,226 - -0.1 3,191,245 - +0.3 3,193,436 - -0.1 3,193,479 - -1.0 3,193,502 - +0.1 3,193,502 - -0.6 3,193,502 - -1.7 3,193,502 - -1.1 3,193,502 - -0.4 3,193,513 - -0.8
Or see this region's nucleotide sequence