Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02032 and ECD_02033 are separated by 322 nucleotides ECD_02033 and ECD_02034 are separated by 46 nucleotides ECD_02034 and ECD_02035 are separated by 103 nucleotides ECD_02035 and ECD_02036 are separated by 193 nucleotides
ECD_02032: ECD_02032 - hydoxyethylthiazole kinase, at 2,082,308 to 2,083,096
_02032
ECD_02033: ECD_02033 - hypothetical protein, at 2,083,419 to 2,083,664
_02033
ECD_02034: ECD_02034 - hypothetical protein, at 2,083,711 to 2,084,142
_02034
ECD_02035: ECD_02035 - hypothetical protein, at 2,084,246 to 2,084,911
_02035
ECD_02036: ECD_02036 - hypothetical protein, at 2,085,105 to 2,085,368
_02036
Position (kb)
2083
2084
2085 Strain fitness (log2 ratio)
-2
-1
0
1 at 2082.719 kb on - strand, within ECD_02032 at 2083.097 kb on - strand at 2083.153 kb on - strand at 2083.418 kb on + strand at 2083.443 kb on + strand at 2083.443 kb on + strand at 2083.454 kb on + strand, within ECD_02033 at 2083.454 kb on + strand, within ECD_02033 at 2083.577 kb on + strand, within ECD_02033 at 2083.649 kb on + strand at 2083.681 kb on + strand at 2083.685 kb on + strand at 2083.685 kb on + strand at 2083.685 kb on + strand at 2083.828 kb on + strand, within ECD_02034 at 2084.018 kb on + strand, within ECD_02034 at 2084.141 kb on - strand at 2084.370 kb on + strand, within ECD_02035 at 2084.388 kb on + strand, within ECD_02035 at 2084.537 kb on + strand, within ECD_02035 at 2084.540 kb on - strand, within ECD_02035 at 2084.600 kb on - strand, within ECD_02035 at 2084.617 kb on - strand, within ECD_02035 at 2084.617 kb on - strand, within ECD_02035 at 2084.841 kb on - strand, within ECD_02035
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 2,082,719 - ECD_02032 0.52 +0.6 2,083,097 - +0.4 2,083,153 - -0.1 2,083,418 + +0.8 2,083,443 + -1.0 2,083,443 + +0.3 2,083,454 + ECD_02033 0.14 +0.9 2,083,454 + ECD_02033 0.14 -0.3 2,083,577 + ECD_02033 0.64 -0.2 2,083,649 + +0.6 2,083,681 + -0.5 2,083,685 + -0.5 2,083,685 + +0.3 2,083,685 + +0.7 2,083,828 + ECD_02034 0.27 +0.8 2,084,018 + ECD_02034 0.71 +0.7 2,084,141 - -0.4 2,084,370 + ECD_02035 0.19 +0.7 2,084,388 + ECD_02035 0.21 -0.4 2,084,537 + ECD_02035 0.44 +0.8 2,084,540 - ECD_02035 0.44 -1.0 2,084,600 - ECD_02035 0.53 +0.8 2,084,617 - ECD_02035 0.56 +0.1 2,084,617 - ECD_02035 0.56 -2.3 2,084,841 - ECD_02035 0.89 -0.3
Or see this region's nucleotide sequence