Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01811 and ECD_01812 are separated by 3 nucleotides ECD_01812 and ECD_01813 are separated by 138 nucleotides ECD_01813 and ECD_01814 are separated by 101 nucleotides ECD_01814 and ECD_01815 are separated by 23 nucleotides
ECD_01811: ECD_01811 - inner membrane protein, at 1,869,443 to 1,870,315
_01811
ECD_01812: ECD_01812 - CopC family protein, at 1,870,319 to 1,870,693
_01812
ECD_01813: ECD_01813 - DNA polymerase III, theta subunit, at 1,870,832 to 1,871,062
_01813
ECD_01814: ECD_01814 - C-N hydrolase family protein, at 1,871,164 to 1,871,820
_01814
ECD_01815: ECD_01815 - exodeoxyribonuclease 10; DNA exonuclease X, at 1,871,844 to 1,872,506
_01815
Position (kb) 1870
1871
1872 Strain fitness (log2 ratio) -1
0
1
2 at 1869.869 kb on - strand, within ECD_01811 at 1869.956 kb on - strand, within ECD_01811 at 1870.089 kb on - strand, within ECD_01811 at 1870.089 kb on - strand, within ECD_01811 at 1870.320 kb on + strand at 1870.393 kb on - strand, within ECD_01812 at 1870.545 kb on - strand, within ECD_01812 at 1870.694 kb on - strand at 1870.697 kb on - strand at 1870.697 kb on - strand at 1870.734 kb on - strand at 1870.744 kb on - strand at 1870.796 kb on - strand at 1871.428 kb on - strand, within ECD_01814 at 1871.428 kb on - strand, within ECD_01814 at 1871.700 kb on + strand, within ECD_01814 at 1871.969 kb on + strand, within ECD_01815 at 1871.969 kb on + strand, within ECD_01815 at 1871.972 kb on + strand, within ECD_01815 at 1872.054 kb on + strand, within ECD_01815
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 1,869,869 - ECD_01811 0.49 -0.0 1,869,956 - ECD_01811 0.59 -0.6 1,870,089 - ECD_01811 0.74 +0.0 1,870,089 - ECD_01811 0.74 +0.7 1,870,320 + -0.2 1,870,393 - ECD_01812 0.20 +1.1 1,870,545 - ECD_01812 0.60 +1.1 1,870,694 - +0.3 1,870,697 - +0.1 1,870,697 - -1.1 1,870,734 - +0.2 1,870,744 - -0.4 1,870,796 - +0.3 1,871,428 - ECD_01814 0.40 -1.1 1,871,428 - ECD_01814 0.40 -0.3 1,871,700 + ECD_01814 0.82 +1.8 1,871,969 + ECD_01815 0.19 -0.0 1,871,969 + ECD_01815 0.19 -0.9 1,871,972 + ECD_01815 0.19 +0.9 1,872,054 + ECD_01815 0.32 -1.1
Or see this region's nucleotide sequence