Strain Fitness in Escherichia coli BL21 around ECD_01178

Experiment: Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01177 and ECD_01178 are separated by 768 nucleotidesECD_01178 and ECD_01179 are separated by 116 nucleotidesECD_01179 and ECD_01180 are separated by 277 nucleotides ECD_01177: ECD_01177 - putative adhesin, at 1,241,233 to 1,244,100 _01177 ECD_01178: ECD_01178 - catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated, at 1,244,869 to 1,245,960 _01178 ECD_01179: ECD_01179 - peptidyl-tRNA hydrolase, at 1,246,077 to 1,246,661 _01179 ECD_01180: ECD_01180 - DUF2583 family putative inner membrane protein, at 1,246,939 to 1,247,217 _01180 Position (kb) 1244 1245 1246Strain fitness (log2 ratio) -2 -1 0 1at 1244.110 kb on - strandat 1246.078 kb on + strandat 1246.755 kb on - strandat 1246.802 kb on + strandat 1246.855 kb on + strandat 1246.876 kb on + strandat 1246.887 kb on + strandat 1246.938 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
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1,244,110 - +0.4
1,246,078 + +0.8
1,246,755 - +0.3
1,246,802 + -1.9
1,246,855 + -0.1
1,246,876 + -0.0
1,246,887 + -0.3
1,246,938 + +0.2

Or see this region's nucleotide sequence