Strain Fitness in Escherichia coli BL21 around ECD_00620

Experiment: Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00619 and ECD_00620 overlap by 4 nucleotidesECD_00620 and ECD_00621 are separated by 382 nucleotides ECD_00619: ECD_00619 - IS150 hypothetical protein, at 642,514 to 643,035 _00619 ECD_00620: ECD_00620 - IS150 putative transposase, at 643,032 to 643,883 _00620 ECD_00621: ECD_00621 - glutamate/aspartate ABC transporter permease, at 644,266 to 644,940 _00621 Position (kb) 643 644Strain fitness (log2 ratio) -1 0 1 2at 642.096 kb on + strandat 642.364 kb on + strandat 644.267 kb on + strandat 644.417 kb on - strand, within ECD_00621at 644.423 kb on + strand, within ECD_00621at 644.423 kb on + strand, within ECD_00621at 644.423 kb on + strand, within ECD_00621at 644.423 kb on + strand, within ECD_00621at 644.424 kb on - strand, within ECD_00621at 644.424 kb on - strand, within ECD_00621at 644.607 kb on - strand, within ECD_00621at 644.734 kb on - strand, within ECD_00621at 644.755 kb on + strand, within ECD_00621

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
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642,096 + -0.5
642,364 + -0.9
644,267 + -0.8
644,417 - ECD_00621 0.22 +0.0
644,423 + ECD_00621 0.23 +0.6
644,423 + ECD_00621 0.23 +2.3
644,423 + ECD_00621 0.23 -0.6
644,423 + ECD_00621 0.23 +0.3
644,424 - ECD_00621 0.23 +0.2
644,424 - ECD_00621 0.23 +0.5
644,607 - ECD_00621 0.51 -1.7
644,734 - ECD_00621 0.69 -0.4
644,755 + ECD_00621 0.72 +0.8

Or see this region's nucleotide sequence