Strain Fitness in Escherichia coli BL21 around ECD_00382

Experiment: Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00379 and ECD_00380 are separated by 11 nucleotidesECD_00380 and ECD_00381 overlap by 1 nucleotidesECD_00381 and ECD_00382 overlap by 11 nucleotidesECD_00382 and ECD_00383 are separated by 21 nucleotides ECD_00379: ECD_00379 - protoheme IX farnesyltransferase, at 414,497 to 415,387 _00379 ECD_00380: ECD_00380 - cytochrome o ubiquinol oxidase subunit IV, at 415,399 to 415,728 _00380 ECD_00381: ECD_00381 - cytochrome o ubiquinol oxidase subunit III, at 415,728 to 416,342 _00381 ECD_00382: ECD_00382 - cytochrome o ubiquinol oxidase subunit I, at 416,332 to 418,323 _00382 ECD_00383: ECD_00383 - cytochrome o ubiquinol oxidase subunit II, at 418,345 to 419,292 _00383 Position (kb) 416 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2at 415.379 kb on - strandat 415.401 kb on - strandat 415.401 kb on - strandat 415.401 kb on - strandat 415.419 kb on - strandat 415.419 kb on - strandat 415.419 kb on - strandat 415.419 kb on - strandat 415.451 kb on - strand, within ECD_00380at 415.716 kb on + strandat 415.716 kb on + strandat 415.729 kb on + strandat 415.730 kb on - strandat 415.730 kb on - strandat 415.858 kb on - strand, within ECD_00381at 416.049 kb on - strand, within ECD_00381at 416.071 kb on + strand, within ECD_00381at 416.072 kb on - strand, within ECD_00381at 416.072 kb on - strand, within ECD_00381at 416.096 kb on - strand, within ECD_00381at 416.162 kb on + strand, within ECD_00381at 416.204 kb on - strand, within ECD_00381at 416.204 kb on - strand, within ECD_00381at 416.207 kb on + strand, within ECD_00381at 416.207 kb on + strand, within ECD_00381at 416.207 kb on + strand, within ECD_00381at 416.208 kb on - strand, within ECD_00381at 416.330 kb on + strandat 416.358 kb on + strandat 416.359 kb on - strandat 416.361 kb on + strandat 416.362 kb on - strandat 416.414 kb on + strandat 416.415 kb on - strandat 416.415 kb on - strandat 416.415 kb on - strandat 416.417 kb on + strandat 416.496 kb on + strandat 416.572 kb on - strand, within ECD_00382at 416.601 kb on + strand, within ECD_00382at 416.603 kb on + strand, within ECD_00382at 416.604 kb on - strand, within ECD_00382at 416.676 kb on - strand, within ECD_00382at 416.775 kb on - strand, within ECD_00382at 416.920 kb on - strand, within ECD_00382at 416.920 kb on - strand, within ECD_00382at 417.212 kb on + strand, within ECD_00382at 417.212 kb on + strand, within ECD_00382at 417.213 kb on - strand, within ECD_00382at 417.213 kb on - strand, within ECD_00382at 417.213 kb on - strand, within ECD_00382at 417.213 kb on - strand, within ECD_00382at 417.213 kb on - strand, within ECD_00382at 417.213 kb on - strand, within ECD_00382at 417.213 kb on - strand, within ECD_00382at 417.358 kb on - strand, within ECD_00382at 417.384 kb on + strand, within ECD_00382at 417.500 kb on + strand, within ECD_00382at 417.500 kb on + strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.501 kb on - strand, within ECD_00382at 417.552 kb on - strand, within ECD_00382at 417.606 kb on + strand, within ECD_00382at 417.614 kb on - strand, within ECD_00382at 417.728 kb on - strand, within ECD_00382at 417.728 kb on - strand, within ECD_00382at 417.730 kb on - strand, within ECD_00382at 417.782 kb on + strand, within ECD_00382at 417.783 kb on - strand, within ECD_00382at 417.783 kb on - strand, within ECD_00382at 417.783 kb on - strand, within ECD_00382at 417.880 kb on - strand, within ECD_00382at 417.893 kb on - strand, within ECD_00382at 417.997 kb on - strand, within ECD_00382at 417.997 kb on - strand, within ECD_00382at 418.028 kb on + strand, within ECD_00382at 418.140 kb on + strandat 418.140 kb on + strandat 418.140 kb on + strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.141 kb on - strandat 418.142 kb on + strandat 418.142 kb on + strandat 418.142 kb on + strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.143 kb on - strandat 418.162 kb on - strandat 418.196 kb on + strandat 418.197 kb on - strandat 418.197 kb on - strandat 418.214 kb on + strandat 418.214 kb on + strandat 418.279 kb on - strandat 418.279 kb on - strandat 418.327 kb on + strandat 418.450 kb on - strand, within ECD_00383at 418.499 kb on + strand, within ECD_00383at 418.514 kb on + strand, within ECD_00383at 418.515 kb on - strand, within ECD_00383at 418.626 kb on + strand, within ECD_00383at 418.626 kb on + strand, within ECD_00383at 418.627 kb on - strand, within ECD_00383at 418.627 kb on - strand, within ECD_00383at 418.677 kb on + strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 418.686 kb on - strand, within ECD_00383at 419.000 kb on - strand, within ECD_00383at 419.000 kb on - strand, within ECD_00383at 419.004 kb on + strand, within ECD_00383at 419.005 kb on - strand, within ECD_00383at 419.005 kb on - strand, within ECD_00383at 419.005 kb on - strand, within ECD_00383at 419.009 kb on - strand, within ECD_00383at 419.060 kb on + strand, within ECD_00383at 419.061 kb on - strand, within ECD_00383at 419.061 kb on - strand, within ECD_00383at 419.064 kb on + strand, within ECD_00383at 419.064 kb on + strand, within ECD_00383at 419.064 kb on + strand, within ECD_00383at 419.065 kb on - strand, within ECD_00383at 419.204 kb on - strandat 419.234 kb on - strandat 419.234 kb on - strandat 419.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
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415,379 - +0.0
415,401 - +0.1
415,401 - -1.6
415,401 - -0.5
415,419 - +1.2
415,419 - -0.1
415,419 - +0.7
415,419 - -0.2
415,451 - ECD_00380 0.16 -0.1
415,716 + +0.2
415,716 + -1.0
415,729 + +0.0
415,730 - +0.0
415,730 - -0.8
415,858 - ECD_00381 0.21 +0.3
416,049 - ECD_00381 0.52 -0.4
416,071 + ECD_00381 0.56 +0.2
416,072 - ECD_00381 0.56 -0.1
416,072 - ECD_00381 0.56 -0.3
416,096 - ECD_00381 0.60 -1.2
416,162 + ECD_00381 0.71 +0.5
416,204 - ECD_00381 0.77 +1.1
416,204 - ECD_00381 0.77 -0.7
416,207 + ECD_00381 0.78 +0.7
416,207 + ECD_00381 0.78 -0.4
416,207 + ECD_00381 0.78 +0.0
416,208 - ECD_00381 0.78 -0.1
416,330 + +1.3
416,358 + -0.6
416,359 - -0.5
416,361 + -0.9
416,362 - +0.4
416,414 + -1.0
416,415 - +0.2
416,415 - -0.1
416,415 - -0.5
416,417 + +1.4
416,496 + -0.5
416,572 - ECD_00382 0.12 +0.1
416,601 + ECD_00382 0.14 +0.3
416,603 + ECD_00382 0.14 -1.1
416,604 - ECD_00382 0.14 +0.2
416,676 - ECD_00382 0.17 +0.1
416,775 - ECD_00382 0.22 -1.3
416,920 - ECD_00382 0.30 +0.0
416,920 - ECD_00382 0.30 +0.9
417,212 + ECD_00382 0.44 -1.3
417,212 + ECD_00382 0.44 -0.3
417,213 - ECD_00382 0.44 -0.5
417,213 - ECD_00382 0.44 +1.0
417,213 - ECD_00382 0.44 -1.3
417,213 - ECD_00382 0.44 -0.7
417,213 - ECD_00382 0.44 +0.1
417,213 - ECD_00382 0.44 -0.3
417,213 - ECD_00382 0.44 -0.2
417,358 - ECD_00382 0.52 -1.8
417,384 + ECD_00382 0.53 -0.5
417,500 + ECD_00382 0.59 +0.8
417,500 + ECD_00382 0.59 -0.1
417,501 - ECD_00382 0.59 -0.3
417,501 - ECD_00382 0.59 +1.0
417,501 - ECD_00382 0.59 -0.0
417,501 - ECD_00382 0.59 +0.4
417,501 - ECD_00382 0.59 +0.9
417,501 - ECD_00382 0.59 +1.1
417,501 - ECD_00382 0.59 -0.6
417,501 - ECD_00382 0.59 -0.3
417,552 - ECD_00382 0.61 +0.1
417,606 + ECD_00382 0.64 -0.2
417,614 - ECD_00382 0.64 -0.2
417,728 - ECD_00382 0.70 +0.4
417,728 - ECD_00382 0.70 -0.8
417,730 - ECD_00382 0.70 -0.3
417,782 + ECD_00382 0.73 -1.5
417,783 - ECD_00382 0.73 -0.8
417,783 - ECD_00382 0.73 -0.9
417,783 - ECD_00382 0.73 +0.3
417,880 - ECD_00382 0.78 -0.7
417,893 - ECD_00382 0.78 +0.3
417,997 - ECD_00382 0.84 +1.1
417,997 - ECD_00382 0.84 -0.4
418,028 + ECD_00382 0.85 -0.2
418,140 + -2.1
418,140 + +0.2
418,140 + -0.1
418,141 - -1.0
418,141 - +0.1
418,141 - -0.1
418,141 - +0.4
418,141 - -0.0
418,141 - -0.4
418,142 + -1.0
418,142 + +0.1
418,142 + +1.2
418,143 - +0.4
418,143 - +0.4
418,143 - -0.2
418,143 - -1.4
418,143 - +0.4
418,143 - -0.2
418,143 - +0.4
418,143 - +0.3
418,143 - +0.0
418,143 - -0.5
418,162 - -0.5
418,196 + -0.4
418,197 - -1.0
418,197 - +0.6
418,214 + -0.1
418,214 + -0.9
418,279 - -0.0
418,279 - +0.1
418,327 + +0.3
418,450 - ECD_00383 0.11 -0.8
418,499 + ECD_00383 0.16 +0.5
418,514 + ECD_00383 0.18 -0.5
418,515 - ECD_00383 0.18 -0.4
418,626 + ECD_00383 0.30 -0.3
418,626 + ECD_00383 0.30 -0.3
418,627 - ECD_00383 0.30 +0.2
418,627 - ECD_00383 0.30 -0.1
418,677 + ECD_00383 0.35 -1.6
418,686 - ECD_00383 0.36 -2.1
418,686 - ECD_00383 0.36 -0.5
418,686 - ECD_00383 0.36 +0.1
418,686 - ECD_00383 0.36 -0.6
418,686 - ECD_00383 0.36 -0.2
419,000 - ECD_00383 0.69 +0.3
419,000 - ECD_00383 0.69 +1.7
419,004 + ECD_00383 0.70 +2.0
419,005 - ECD_00383 0.70 -1.3
419,005 - ECD_00383 0.70 -0.1
419,005 - ECD_00383 0.70 -0.8
419,009 - ECD_00383 0.70 -0.5
419,060 + ECD_00383 0.75 -1.0
419,061 - ECD_00383 0.76 -0.4
419,061 - ECD_00383 0.76 +1.5
419,064 + ECD_00383 0.76 +0.0
419,064 + ECD_00383 0.76 -1.3
419,064 + ECD_00383 0.76 -1.4
419,065 - ECD_00383 0.76 -0.5
419,204 - -0.5
419,234 - +0.3
419,234 - +0.6
419,249 - -0.6

Or see this region's nucleotide sequence