Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00079 and ECD_00080 are separated by 2 nucleotides ECD_00080 and ECD_00081 are separated by 179 nucleotides ECD_00081 and ECD_00082 are separated by 601 nucleotides
ECD_00079: ECD_00079 - acetolactate synthase 3 large subunit, at 88,435 to 90,159
_00079
ECD_00080: ECD_00080 - acetolactate synthase 3, small subunit, valine-sensitive, at 90,162 to 90,653
_00080
ECD_00081: ECD_00081 - transcriptional repressor-activator for carbon metabolism, at 90,833 to 91,837
_00081
ECD_00082: ECD_00082 - RsmH methytransferase inhibitor, at 92,439 to 92,897
_00082
Position (kb) 90
91
92 Strain fitness (log2 ratio) -2
-1
0
1 at 89.900 kb on - strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.924 kb on - strand, within ECD_00079 at 89.924 kb on - strand, within ECD_00079 at 89.924 kb on - strand, within ECD_00079 at 89.925 kb on + strand, within ECD_00079 at 89.925 kb on + strand, within ECD_00079 at 89.925 kb on + strand, within ECD_00079 at 89.926 kb on - strand, within ECD_00079 at 89.926 kb on - strand, within ECD_00079 at 89.926 kb on - strand, within ECD_00079 at 89.966 kb on - strand, within ECD_00079 at 89.966 kb on - strand, within ECD_00079 at 90.019 kb on - strand at 90.046 kb on - strand at 90.095 kb on - strand at 90.162 kb on - strand at 90.184 kb on + strand at 90.296 kb on + strand, within ECD_00080 at 90.328 kb on + strand, within ECD_00080 at 90.352 kb on + strand, within ECD_00080 at 90.471 kb on - strand, within ECD_00080 at 90.473 kb on + strand, within ECD_00080 at 90.497 kb on + strand, within ECD_00080 at 90.497 kb on + strand, within ECD_00080 at 90.522 kb on - strand, within ECD_00080 at 90.532 kb on + strand, within ECD_00080 at 90.764 kb on - strand at 90.770 kb on + strand at 90.817 kb on + strand at 90.887 kb on + strand at 90.888 kb on - strand at 90.888 kb on - strand at 90.888 kb on - strand at 91.021 kb on + strand, within ECD_00081 at 91.058 kb on + strand, within ECD_00081 at 91.058 kb on + strand, within ECD_00081 at 91.058 kb on + strand, within ECD_00081 at 91.076 kb on + strand, within ECD_00081 at 91.077 kb on - strand, within ECD_00081 at 91.232 kb on + strand, within ECD_00081 at 91.232 kb on + strand, within ECD_00081 at 91.353 kb on + strand, within ECD_00081 at 91.358 kb on - strand, within ECD_00081 at 91.358 kb on - strand, within ECD_00081 at 91.382 kb on + strand, within ECD_00081 at 91.478 kb on + strand, within ECD_00081 at 91.490 kb on + strand, within ECD_00081 at 91.490 kb on + strand, within ECD_00081 at 91.677 kb on + strand, within ECD_00081 at 91.677 kb on + strand, within ECD_00081 at 91.795 kb on + strand at 91.801 kb on + strand at 91.832 kb on - strand at 91.832 kb on - strand at 91.836 kb on - strand at 91.852 kb on + strand at 91.936 kb on + strand at 91.937 kb on - strand at 91.940 kb on - strand at 91.940 kb on - strand at 91.946 kb on - strand at 92.000 kb on + strand at 92.000 kb on + strand at 92.000 kb on + strand at 92.035 kb on + strand at 92.147 kb on + strand at 92.147 kb on + strand at 92.148 kb on - strand at 92.148 kb on - strand at 92.187 kb on - strand at 92.188 kb on + strand at 92.204 kb on + strand at 92.255 kb on + strand at 92.267 kb on + strand at 92.422 kb on + strand at 92.671 kb on + strand, within ECD_00082 at 92.671 kb on + strand, within ECD_00082
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 89,900 - ECD_00079 0.85 +1.1 89,923 + ECD_00079 0.86 -0.6 89,923 + ECD_00079 0.86 -0.9 89,923 + ECD_00079 0.86 +1.4 89,923 + ECD_00079 0.86 -0.6 89,923 + ECD_00079 0.86 -1.0 89,923 + ECD_00079 0.86 -0.1 89,923 + ECD_00079 0.86 -1.2 89,923 + ECD_00079 0.86 -0.4 89,924 - ECD_00079 0.86 -0.5 89,924 - ECD_00079 0.86 -1.3 89,924 - ECD_00079 0.86 +0.3 89,925 + ECD_00079 0.86 +0.9 89,925 + ECD_00079 0.86 +0.3 89,925 + ECD_00079 0.86 +0.5 89,926 - ECD_00079 0.86 +1.1 89,926 - ECD_00079 0.86 -0.3 89,926 - ECD_00079 0.86 -0.9 89,966 - ECD_00079 0.89 +1.1 89,966 - ECD_00079 0.89 +0.6 90,019 - -0.1 90,046 - +0.2 90,095 - -1.3 90,162 - +0.5 90,184 + -1.0 90,296 + ECD_00080 0.27 +0.0 90,328 + ECD_00080 0.34 -0.1 90,352 + ECD_00080 0.39 +0.2 90,471 - ECD_00080 0.63 +0.2 90,473 + ECD_00080 0.63 +0.3 90,497 + ECD_00080 0.68 -0.6 90,497 + ECD_00080 0.68 +0.0 90,522 - ECD_00080 0.73 +1.3 90,532 + ECD_00080 0.75 -0.7 90,764 - -0.5 90,770 + -0.8 90,817 + -0.9 90,887 + +0.5 90,888 - +1.4 90,888 - -1.3 90,888 - +0.0 91,021 + ECD_00081 0.19 +1.1 91,058 + ECD_00081 0.22 -2.2 91,058 + ECD_00081 0.22 -0.3 91,058 + ECD_00081 0.22 -1.0 91,076 + ECD_00081 0.24 -0.2 91,077 - ECD_00081 0.24 +1.4 91,232 + ECD_00081 0.40 -1.4 91,232 + ECD_00081 0.40 -1.2 91,353 + ECD_00081 0.52 -0.7 91,358 - ECD_00081 0.52 -0.7 91,358 - ECD_00081 0.52 +0.4 91,382 + ECD_00081 0.55 -0.2 91,478 + ECD_00081 0.64 -1.1 91,490 + ECD_00081 0.65 -1.0 91,490 + ECD_00081 0.65 -2.0 91,677 + ECD_00081 0.84 -2.1 91,677 + ECD_00081 0.84 -2.4 91,795 + -1.7 91,801 + +0.3 91,832 - +0.4 91,832 - -1.4 91,836 - -0.2 91,852 + -0.3 91,936 + -0.4 91,937 - -0.7 91,940 - +0.8 91,940 - -0.2 91,946 - -0.4 92,000 + -0.4 92,000 + +0.1 92,000 + +1.0 92,035 + +0.1 92,147 + +0.2 92,147 + +0.3 92,148 - +0.1 92,148 - +0.5 92,187 - -0.1 92,188 + -0.8 92,204 + -1.3 92,255 + -0.4 92,267 + -0.8 92,422 + -0.4 92,671 + ECD_00082 0.51 -0.3 92,671 + ECD_00082 0.51 -1.0
Or see this region's nucleotide sequence