Strain Fitness in Erwinia tracheiphila SCR3

Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26000

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
				remove
9,506	+			-3.7
9,574	+	LU632_RS25990	0.19	-2.3
9,574	+	LU632_RS25990	0.19	-2.2
9,595	+	LU632_RS25990	0.24	+0.4
9,595	+	LU632_RS25990	0.24	+0.6
9,595	+	LU632_RS25990	0.24	+0.2
9,595	+	LU632_RS25990	0.24	-1.1
9,595	+	LU632_RS25990	0.24	-2.1
9,596	-	LU632_RS25990	0.25	-0.1
9,596	-	LU632_RS25990	0.25	-0.0
9,596	-	LU632_RS25990	0.25	+0.7
9,596	-	LU632_RS25990	0.25	-1.3
9,596	-	LU632_RS25990	0.25	-0.1
9,596	-	LU632_RS25990	0.25	+0.3
9,596	-	LU632_RS25990	0.25	+0.4
9,596	-	LU632_RS25990	0.25	+3.1
9,601	+	LU632_RS25990	0.26	-0.1
9,602	-	LU632_RS25990	0.26	+2.3
9,628	+	LU632_RS25990	0.32	-0.2
9,628	+	LU632_RS25990	0.32	+1.9
9,699	+	LU632_RS25990	0.50	-3.3
9,751	+	LU632_RS25990	0.62	-1.3
9,751	+	LU632_RS25990	0.62	+1.4
9,751	+	LU632_RS25990	0.62	+1.7
9,752	-	LU632_RS25990	0.62	+3.0
9,752	-	LU632_RS25990	0.62	-1.4
9,752	-	LU632_RS25990	0.62	-1.7
9,752	-	LU632_RS25990	0.62	-0.2
9,752	-	LU632_RS25990	0.62	+0.0
9,754	+	LU632_RS25990	0.63	+1.1
9,754	+	LU632_RS25990	0.63	-2.1
9,790	+	LU632_RS25990	0.71	+1.3
9,828	-	LU632_RS25990	0.81	+0.1
9,895	+			+0.8
9,899	-			-0.0
9,899	-			+0.1
9,910	+			-2.3
9,910	+			+0.1
9,910	+			-0.7
9,910	+			+1.0
9,911	-			+1.2
9,911	-			-3.3
9,911	-			+2.4
9,922	+			-1.4
9,923	-			-2.5
9,923	-			-0.2
9,928	+			-1.6
9,929	-			-2.1
10,012	-	LU632_RS25995	0.22	+0.4
10,112	+	LU632_RS25995	0.44	-1.8
10,123	+	LU632_RS25995	0.47	+2.8
10,124	-	LU632_RS25995	0.47	+2.9
10,124	-	LU632_RS25995	0.47	+1.6
10,132	-	LU632_RS25995	0.49	+0.4
10,135	+	LU632_RS25995	0.49	-2.9
10,136	-	LU632_RS25995	0.50	+0.0
10,158	+	LU632_RS25995	0.55	-1.2
10,158	+	LU632_RS25995	0.55	-0.3
10,158	+	LU632_RS25995	0.55	+4.9
10,158	+	LU632_RS25995	0.55	+1.5
10,254	+	LU632_RS25995	0.76	+0.9
10,254	+	LU632_RS25995	0.76	-1.1
10,317	+			-1.1
10,318	-			+0.6
10,318	-			+0.4
10,344	+			+1.4
10,344	+			+0.4
10,344	+			+0.2
10,344	+			+0.0
10,344	+			-0.4
10,345	-			-0.1
10,345	-			+1.1
10,345	-			+2.9
10,345	-			-0.5
10,345	-			+1.5
10,346	+			+0.7
10,346	+			+0.5
10,346	+			-0.5
10,346	+			-0.4
10,347	-			+0.7
10,347	-			+0.2
10,350	+			-1.9
10,350	+			-0.3
10,350	+			-1.5
10,350	+			+0.4
10,350	+			+2.6
10,351	-			+0.8
10,351	-			+0.7
10,450	+			-0.0
10,450	+			-2.1
10,450	+			+1.0
10,450	+			-1.2
10,498	-			+0.8
10,503	+			-0.8
10,503	+			+1.7
10,503	+			+0.8
10,503	+			+1.2
10,503	+			+0.5
10,503	+			+0.9
10,503	+			+0.5
10,503	+			-0.4
10,503	+			-0.4
10,503	+			+0.2
10,503	+			+3.8
10,503	+			+1.5
10,504	-			-0.2
10,504	-			+1.0
10,504	-			-2.3
10,504	-			+0.5
10,506	+			-0.1
10,614	-	LU632_RS26000	0.16	-2.7
10,625	+	LU632_RS26000	0.17	+3.4
10,633	+	LU632_RS26000	0.18	-0.3
10,674	+	LU632_RS26000	0.21	+1.3
10,674	+	LU632_RS26000	0.21	-1.5
10,674	+	LU632_RS26000	0.21	+0.0
10,674	+	LU632_RS26000	0.21	-1.3
10,674	+	LU632_RS26000	0.21	-1.4
10,674	+	LU632_RS26000	0.21	-2.5
10,674	+	LU632_RS26000	0.21	+4.8
10,674	+	LU632_RS26000	0.21	+0.3
10,674	+	LU632_RS26000	0.21	+0.8
10,675	-	LU632_RS26000	0.21	+0.1
10,675	-	LU632_RS26000	0.21	+1.9
10,675	-	LU632_RS26000	0.21	+2.1
10,684	+	LU632_RS26000	0.21	-0.5
10,685	-	LU632_RS26000	0.21	-2.6
10,686	+	LU632_RS26000	0.21	-3.1
10,686	+	LU632_RS26000	0.21	-2.8
10,686	+	LU632_RS26000	0.21	-0.8
10,686	+	LU632_RS26000	0.21	+1.2
10,686	+	LU632_RS26000	0.21	+0.1
10,686	+	LU632_RS26000	0.21	+0.1
10,687	-	LU632_RS26000	0.21	-0.9
10,687	-	LU632_RS26000	0.21	-0.8
10,687	-	LU632_RS26000	0.21	+2.9
10,687	-	LU632_RS26000	0.21	-4.0
10,687	-	LU632_RS26000	0.21	+1.2
10,705	-	LU632_RS26000	0.23	+0.5
10,705	-	LU632_RS26000	0.23	-2.5
10,705	-	LU632_RS26000	0.23	-1.1
10,774	+	LU632_RS26000	0.27	-0.6
10,783	+	LU632_RS26000	0.28	+0.5
10,794	+	LU632_RS26000	0.29	-1.5
10,795	-	LU632_RS26000	0.29	-1.8
10,795	-	LU632_RS26000	0.29	+4.8
10,795	-	LU632_RS26000	0.29	+2.6
10,928	-	LU632_RS26000	0.38	+1.1
10,977	+	LU632_RS26000	0.41	-2.7
10,977	+	LU632_RS26000	0.41	+1.1
10,978	-	LU632_RS26000	0.41	-3.0
10,998	+	LU632_RS26000	0.42	-1.1
10,999	-	LU632_RS26000	0.43	+0.2
10,999	-	LU632_RS26000	0.43	+0.4
11,026	+	LU632_RS26000	0.44	-0.5
11,048	+	LU632_RS26000	0.46	+5.5
11,056	+	LU632_RS26000	0.46	-1.5
11,109	+	LU632_RS26000	0.50	-2.8
11,109	+	LU632_RS26000	0.50	+3.7
11,109	+	LU632_RS26000	0.50	-4.0
11,109	+	LU632_RS26000	0.50	-0.4
11,109	+	LU632_RS26000	0.50	+0.7
11,109	+	LU632_RS26000	0.50	+0.3
11,110	-	LU632_RS26000	0.50	-0.1
11,110	-	LU632_RS26000	0.50	+1.1
11,110	-	LU632_RS26000	0.50	+1.1
11,110	-	LU632_RS26000	0.50	+2.0
11,110	-	LU632_RS26000	0.50	+1.1
11,110	-	LU632_RS26000	0.50	-0.6
11,110	-	LU632_RS26000	0.50	+0.2
11,110	-	LU632_RS26000	0.50	-0.5
11,110	-	LU632_RS26000	0.50	-1.4
11,110	-	LU632_RS26000	0.50	+0.5
11,110	-	LU632_RS26000	0.50	-2.1
11,118	-	LU632_RS26000	0.51	+2.3
11,166	+	LU632_RS26000	0.54	-1.8
11,167	-	LU632_RS26000	0.54	-1.2
11,494	+	LU632_RS26000	0.76	-1.9
11,604	+	LU632_RS26000	0.83	-1.1
11,604	+	LU632_RS26000	0.83	+1.1
11,604	+	LU632_RS26000	0.83	-1.1
11,605	-	LU632_RS26000	0.84	-1.6
11,605	-	LU632_RS26000	0.84	-3.0
11,605	-	LU632_RS26000	0.84	-0.7
11,634	+	LU632_RS26000	0.85	+0.1
11,635	-	LU632_RS26000	0.86	+0.3
11,635	-	LU632_RS26000	0.86	-1.5
11,635	-	LU632_RS26000	0.86	-2.1
11,638	-	LU632_RS26000	0.86	-1.2
11,656	-	LU632_RS26000	0.87	+2.6
11,656	-	LU632_RS26000	0.87	+0.9
11,706	+			-0.5
11,848	+			+0.5
11,848	+			-0.0
11,848	+			+0.1
11,848	+			+0.0
11,849	-			+3.3
11,849	-			-2.3
11,849	-			-0.8
11,849	-			-2.7
11,849	-			+0.2
11,852	+			-1.7
11,852	+			-0.2
11,852	+			-0.8
11,852	+			-0.6
11,852	+			-0.6
11,853	-			-1.5
11,853	-			+0.7
11,853	-			+0.3
11,853	-			-1.4
11,853	-			-0.9
11,853	-			-2.3
11,853	-			-0.7
11,853	-			+0.5
11,882	-			+1.7
11,900	+			-0.6
11,900	+			-0.1
11,904	+			+2.4
11,905	-			-2.0
11,934	+	LU632_RS26005	0.15	+2.0
11,937	+	LU632_RS26005	0.16	+0.3
11,938	-	LU632_RS26005	0.16	-1.5
11,964	+	LU632_RS26005	0.20	-1.7
11,965	-	LU632_RS26005	0.21	-2.5
12,013	-	LU632_RS26005	0.29	+1.3
12,037	-	LU632_RS26005	0.34	-0.6
12,099	-	LU632_RS26005	0.45	-3.9
12,099	-	LU632_RS26005	0.45	-0.5
12,171	+	LU632_RS26005	0.58	-0.8
12,195	+	LU632_RS26005	0.62	+0.1
12,274	+	LU632_RS26005	0.77	+2.0
12,377	+			+2.4
12,377	+			+1.9
12,434	-			-0.1
12,434	-			-1.1
12,461	+	LU632_RS26010	0.15	-1.2
12,461	+	LU632_RS26010	0.15	-1.1
12,461	+	LU632_RS26010	0.15	-1.1
12,462	-	LU632_RS26010	0.15	+3.9
12,462	-	LU632_RS26010	0.15	+0.5
12,466	+	LU632_RS26010	0.16	+0.5
12,466	+	LU632_RS26010	0.16	-0.1
12,467	-	LU632_RS26010	0.17	+0.3
12,488	+	LU632_RS26010	0.22	-0.7
12,488	+	LU632_RS26010	0.22	+0.5
12,489	-	LU632_RS26010	0.23	-0.4
12,490	+	LU632_RS26010	0.23	-1.4
12,516	-	LU632_RS26010	0.30	+0.7
12,533	+	LU632_RS26010	0.34	-4.1
12,533	+	LU632_RS26010	0.34	+0.5
12,534	-	LU632_RS26010	0.35	+0.0
12,651	+	LU632_RS26010	0.66	+0.5
12,665	+	LU632_RS26010	0.70	-1.5
12,665	+	LU632_RS26010	0.70	-1.1
12,665	+	LU632_RS26010	0.70	-1.7
12,665	+	LU632_RS26010	0.70	-1.1
12,666	-	LU632_RS26010	0.70	+1.2
12,666	-	LU632_RS26010	0.70	-2.3
12,666	-	LU632_RS26010	0.70	-2.5
12,666	-	LU632_RS26010	0.70	+1.8
12,666	-	LU632_RS26010	0.70	-0.7
12,666	-	LU632_RS26010	0.70	-1.5
12,666	-	LU632_RS26010	0.70	-1.5
12,708	+	LU632_RS26010	0.81	+0.3
12,708	+	LU632_RS26010	0.81	-0.7
12,795	+			-2.1
12,795	+			+2.1
12,796	-			+0.1
12,796	-			-3.2
12,796	-			-0.3
12,796	-			+0.4
12,796	-			-0.0
12,796	-			-0.9
12,796	-			+0.4
12,796	-			+1.5
12,796	-			+1.6
12,813	+			-1.5

Or see this region's nucleotide sequence