Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt traA and traL are separated by 12 nucleotides traL and traE are separated by 12 nucleotides traE and LU632_RS25810 overlap by 17 nucleotides LU632_RS25810 and traB overlap by 4 nucleotides
LU632_RS25795: traA - type IV conjugative transfer system pilin TraA, at 11,629 to 11,961
traA
LU632_RS25800: traL - type IV conjugative transfer system protein TraL, at 11,974 to 12,282
traL
LU632_RS25805: traE - type IV conjugative transfer system protein TraE, at 12,295 to 12,864
traE
LU632_RS25810: LU632_RS25810 - type-F conjugative transfer system secretin TraK, at 12,848 to 13,579
_RS25810
LU632_RS25815: traB - F-type conjugal transfer pilus assembly protein TraB, at 13,576 to 14,937
traB
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 11.876 kb on - strand, within traA at 11.876 kb on - strand, within traA at 11.876 kb on - strand, within traA at 11.876 kb on - strand, within traA at 11.969 kb on + strand at 12.101 kb on - strand, within traL at 12.114 kb on - strand, within traL at 12.114 kb on - strand, within traL at 12.114 kb on - strand, within traL at 12.128 kb on - strand, within traL at 12.128 kb on - strand, within traL at 12.190 kb on + strand, within traL at 12.196 kb on - strand, within traL at 12.280 kb on + strand at 12.295 kb on - strand at 12.295 kb on - strand at 12.324 kb on + strand at 12.324 kb on + strand at 12.337 kb on + strand at 12.343 kb on - strand at 12.378 kb on + strand, within traE at 12.387 kb on + strand, within traE at 12.387 kb on + strand, within traE at 12.391 kb on + strand, within traE at 12.392 kb on - strand, within traE at 12.392 kb on - strand, within traE at 12.589 kb on + strand, within traE at 12.590 kb on - strand, within traE at 12.657 kb on + strand, within traE at 12.679 kb on + strand, within traE at 12.680 kb on - strand, within traE at 12.784 kb on + strand, within traE at 12.858 kb on + strand at 12.858 kb on + strand at 12.862 kb on + strand at 12.862 kb on + strand at 12.862 kb on + strand at 12.863 kb on - strand at 12.863 kb on - strand at 12.904 kb on + strand at 12.908 kb on - strand at 12.912 kb on + strand at 12.912 kb on + strand at 12.996 kb on + strand, within LU632_RS25810 at 12.997 kb on - strand, within LU632_RS25810 at 12.997 kb on - strand, within LU632_RS25810 at 13.106 kb on - strand, within LU632_RS25810 at 13.115 kb on - strand, within LU632_RS25810 at 13.146 kb on + strand, within LU632_RS25810 at 13.188 kb on + strand, within LU632_RS25810 at 13.188 kb on + strand, within LU632_RS25810 at 13.188 kb on + strand, within LU632_RS25810 at 13.188 kb on + strand, within LU632_RS25810 at 13.189 kb on - strand, within LU632_RS25810 at 13.189 kb on - strand, within LU632_RS25810 at 13.189 kb on - strand, within LU632_RS25810 at 13.190 kb on + strand, within LU632_RS25810 at 13.190 kb on + strand, within LU632_RS25810 at 13.191 kb on - strand, within LU632_RS25810 at 13.195 kb on + strand, within LU632_RS25810 at 13.195 kb on + strand, within LU632_RS25810 at 13.196 kb on - strand, within LU632_RS25810 at 13.257 kb on - strand, within LU632_RS25810 at 13.290 kb on + strand, within LU632_RS25810 at 13.291 kb on - strand, within LU632_RS25810 at 13.291 kb on - strand, within LU632_RS25810 at 13.291 kb on - strand, within LU632_RS25810 at 13.386 kb on + strand, within LU632_RS25810 at 13.387 kb on - strand, within LU632_RS25810 at 13.418 kb on + strand, within LU632_RS25810 at 13.439 kb on - strand, within LU632_RS25810 at 13.469 kb on + strand, within LU632_RS25810 at 13.469 kb on + strand, within LU632_RS25810 at 13.469 kb on + strand, within LU632_RS25810 at 13.469 kb on + strand, within LU632_RS25810 at 13.469 kb on + strand, within LU632_RS25810 at 13.469 kb on + strand, within LU632_RS25810 at 13.470 kb on - strand, within LU632_RS25810 at 13.519 kb on - strand at 13.519 kb on - strand at 13.521 kb on + strand at 13.729 kb on - strand, within traB at 13.729 kb on - strand, within traB at 13.762 kb on - strand, within traB at 13.811 kb on + strand, within traB at 13.811 kb on + strand, within traB at 13.812 kb on - strand, within traB at 13.812 kb on - strand, within traB at 13.812 kb on - strand, within traB at 13.939 kb on - strand, within traB at 13.983 kb on + strand, within traB at 14.035 kb on - strand, within traB at 14.078 kb on + strand, within traB at 14.079 kb on - strand, within traB at 14.159 kb on - strand, within traB at 14.159 kb on - strand, within traB at 14.161 kb on - strand, within traB at 14.239 kb on - strand, within traB at 14.239 kb on - strand, within traB at 14.239 kb on - strand, within traB at 14.255 kb on + strand, within traB at 14.268 kb on + strand, within traB at 14.269 kb on - strand, within traB at 14.269 kb on - strand, within traB at 14.274 kb on - strand, within traB at 14.274 kb on - strand, within traB at 14.283 kb on + strand, within traB at 14.283 kb on + strand, within traB at 14.284 kb on - strand, within traB at 14.342 kb on + strand, within traB at 14.342 kb on + strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.385 kb on + strand, within traB at 14.385 kb on + strand, within traB at 14.386 kb on - strand, within traB at 14.386 kb on - strand, within traB at 14.386 kb on - strand, within traB at 14.419 kb on - strand, within traB at 14.455 kb on - strand, within traB at 14.482 kb on - strand, within traB at 14.536 kb on - strand, within traB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 11,876 - traA LU632_RS25795 0.74 +0.3 11,876 - traA LU632_RS25795 0.74 -1.4 11,876 - traA LU632_RS25795 0.74 +2.4 11,876 - traA LU632_RS25795 0.74 +0.4 11,969 + -2.0 12,101 - traL LU632_RS25800 0.41 +1.6 12,114 - traL LU632_RS25800 0.45 -0.4 12,114 - traL LU632_RS25800 0.45 -1.8 12,114 - traL LU632_RS25800 0.45 -1.0 12,128 - traL LU632_RS25800 0.50 +1.6 12,128 - traL LU632_RS25800 0.50 +2.6 12,190 + traL LU632_RS25800 0.70 +1.0 12,196 - traL LU632_RS25800 0.72 -1.0 12,280 + -0.8 12,295 - -0.2 12,295 - -1.2 12,324 + +1.6 12,324 + -2.2 12,337 + +0.2 12,343 - +0.1 12,378 + traE LU632_RS25805 0.15 +0.8 12,387 + traE LU632_RS25805 0.16 -0.1 12,387 + traE LU632_RS25805 0.16 -1.5 12,391 + traE LU632_RS25805 0.17 -0.8 12,392 - traE LU632_RS25805 0.17 +0.6 12,392 - traE LU632_RS25805 0.17 -0.6 12,589 + traE LU632_RS25805 0.52 +1.4 12,590 - traE LU632_RS25805 0.52 +0.0 12,657 + traE LU632_RS25805 0.64 -1.0 12,679 + traE LU632_RS25805 0.67 -1.4 12,680 - traE LU632_RS25805 0.68 +0.8 12,784 + traE LU632_RS25805 0.86 -0.2 12,858 + -1.6 12,858 + +3.1 12,862 + +1.0 12,862 + -0.5 12,862 + -1.4 12,863 - -0.4 12,863 - +0.4 12,904 + +0.0 12,908 - -1.4 12,912 + -1.4 12,912 + +0.9 12,996 + LU632_RS25810 0.20 +0.7 12,997 - LU632_RS25810 0.20 +0.9 12,997 - LU632_RS25810 0.20 -0.4 13,106 - LU632_RS25810 0.35 -2.4 13,115 - LU632_RS25810 0.36 +0.7 13,146 + LU632_RS25810 0.41 +1.8 13,188 + LU632_RS25810 0.46 +1.0 13,188 + LU632_RS25810 0.46 -1.2 13,188 + LU632_RS25810 0.46 +0.5 13,188 + LU632_RS25810 0.46 -0.1 13,189 - LU632_RS25810 0.47 -1.4 13,189 - LU632_RS25810 0.47 +0.4 13,189 - LU632_RS25810 0.47 +0.2 13,190 + LU632_RS25810 0.47 +2.3 13,190 + LU632_RS25810 0.47 +0.9 13,191 - LU632_RS25810 0.47 -0.9 13,195 + LU632_RS25810 0.47 -1.8 13,195 + LU632_RS25810 0.47 -0.4 13,196 - LU632_RS25810 0.48 +0.3 13,257 - LU632_RS25810 0.56 +0.7 13,290 + LU632_RS25810 0.60 -1.4 13,291 - LU632_RS25810 0.61 -1.5 13,291 - LU632_RS25810 0.61 +3.9 13,291 - LU632_RS25810 0.61 -0.9 13,386 + LU632_RS25810 0.73 -0.6 13,387 - LU632_RS25810 0.74 -0.0 13,418 + LU632_RS25810 0.78 +1.6 13,439 - LU632_RS25810 0.81 -1.3 13,469 + LU632_RS25810 0.85 +0.6 13,469 + LU632_RS25810 0.85 +0.8 13,469 + LU632_RS25810 0.85 +1.3 13,469 + LU632_RS25810 0.85 +0.2 13,469 + LU632_RS25810 0.85 -0.6 13,469 + LU632_RS25810 0.85 +0.1 13,470 - LU632_RS25810 0.85 +0.8 13,519 - -0.1 13,519 - +0.2 13,521 + +0.2 13,729 - traB LU632_RS25815 0.11 -1.8 13,729 - traB LU632_RS25815 0.11 +2.8 13,762 - traB LU632_RS25815 0.14 -1.3 13,811 + traB LU632_RS25815 0.17 +0.4 13,811 + traB LU632_RS25815 0.17 -0.8 13,812 - traB LU632_RS25815 0.17 +0.7 13,812 - traB LU632_RS25815 0.17 -1.4 13,812 - traB LU632_RS25815 0.17 +0.4 13,939 - traB LU632_RS25815 0.27 +0.3 13,983 + traB LU632_RS25815 0.30 -2.6 14,035 - traB LU632_RS25815 0.34 -0.1 14,078 + traB LU632_RS25815 0.37 +0.8 14,079 - traB LU632_RS25815 0.37 +0.6 14,159 - traB LU632_RS25815 0.43 +1.0 14,159 - traB LU632_RS25815 0.43 +1.1 14,161 - traB LU632_RS25815 0.43 +4.6 14,239 - traB LU632_RS25815 0.49 +0.2 14,239 - traB LU632_RS25815 0.49 -0.0 14,239 - traB LU632_RS25815 0.49 -2.0 14,255 + traB LU632_RS25815 0.50 -0.1 14,268 + traB LU632_RS25815 0.51 -0.9 14,269 - traB LU632_RS25815 0.51 +1.5 14,269 - traB LU632_RS25815 0.51 -0.3 14,274 - traB LU632_RS25815 0.51 +0.6 14,274 - traB LU632_RS25815 0.51 -0.6 14,283 + traB LU632_RS25815 0.52 +0.9 14,283 + traB LU632_RS25815 0.52 -1.2 14,284 - traB LU632_RS25815 0.52 -0.1 14,342 + traB LU632_RS25815 0.56 +1.0 14,342 + traB LU632_RS25815 0.56 +0.2 14,343 - traB LU632_RS25815 0.56 +1.0 14,343 - traB LU632_RS25815 0.56 +0.6 14,343 - traB LU632_RS25815 0.56 -2.2 14,343 - traB LU632_RS25815 0.56 -0.5 14,343 - traB LU632_RS25815 0.56 -1.3 14,343 - traB LU632_RS25815 0.56 +1.3 14,385 + traB LU632_RS25815 0.59 -0.6 14,385 + traB LU632_RS25815 0.59 -2.8 14,386 - traB LU632_RS25815 0.59 -0.7 14,386 - traB LU632_RS25815 0.59 -0.8 14,386 - traB LU632_RS25815 0.59 +1.6 14,419 - traB LU632_RS25815 0.62 +0.9 14,455 - traB LU632_RS25815 0.65 -0.9 14,482 - traB LU632_RS25815 0.67 +0.3 14,536 - traB LU632_RS25815 0.70 -2.0
Or see this region's nucleotide sequence