Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25150

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
4,785,473	-		LU632_RS25145	0.40	+0.0
4,785,475	+		LU632_RS25145	0.40	+0.2
4,785,520	+		LU632_RS25145	0.43	+0.6
4,785,592	+		LU632_RS25145	0.48	-0.1
4,785,593	-		LU632_RS25145	0.48	-0.4
4,785,593	-		LU632_RS25145	0.48	+0.5
4,785,628	-		LU632_RS25145	0.50	-0.6
4,785,669	+		LU632_RS25145	0.53	-0.7
4,785,669	+		LU632_RS25145	0.53	+1.0
4,785,796	+		LU632_RS25145	0.61	+0.2
4,785,796	+		LU632_RS25145	0.61	-0.6
4,785,797	-		LU632_RS25145	0.61	-0.4
4,785,797	-		LU632_RS25145	0.61	+0.1
4,785,797	-		LU632_RS25145	0.61	+0.6
4,785,987	-		LU632_RS25145	0.74	-0.1
4,786,048	+		LU632_RS25145	0.78	-1.3
4,786,132	-		LU632_RS25145	0.83	+1.0
4,786,276	+				-2.0
4,786,277	-				+2.1
4,786,277	-				+0.5
4,786,277	-				-0.7
4,786,336	-				-1.1
4,786,429	+		LU632_RS25150	0.10	+1.0
4,786,429	+		LU632_RS25150	0.10	+0.4
4,786,430	-		LU632_RS25150	0.10	-0.7
4,786,430	-		LU632_RS25150	0.10	+0.7
4,786,527	+		LU632_RS25150	0.38	+0.6
4,786,527	+		LU632_RS25150	0.38	+1.7
4,786,528	-		LU632_RS25150	0.38	+0.1
4,786,740	+				-0.3
4,786,740	+				+0.0
4,786,741	-				+0.2
4,786,779	+				+0.9
4,786,782	+				-0.5
4,786,783	-				+0.0
4,786,909	+		LU632_RS25155	0.33	-1.9
4,786,909	+		LU632_RS25155	0.33	-1.9
4,786,948	-		LU632_RS25155	0.41	+0.6
4,787,336	+				+2.2
4,787,357	+				-1.7
4,787,484	+				+0.0
4,787,579	-		LU632_RS25160	0.13	-0.2
4,787,594	+		LU632_RS25160	0.14	+1.4
4,787,595	-		LU632_RS25160	0.14	-1.5
4,787,595	-		LU632_RS25160	0.14	-0.6
4,787,598	+		LU632_RS25160	0.14	-1.2
4,787,599	-		LU632_RS25160	0.14	+0.5
4,787,599	-		LU632_RS25160	0.14	+1.2
4,787,650	+		LU632_RS25160	0.17	+0.7
4,787,748	+		LU632_RS25160	0.22	-0.5