Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25150

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25145 and LU632_RS25150 are separated by 9 nucleotidesLU632_RS25150 and LU632_RS25155 are separated by 9 nucleotidesLU632_RS25155 and LU632_RS25160 are separated by 129 nucleotides LU632_RS25145: LU632_RS25145 - phage tail sheath subtilisin-like domain-containing protein, at 4,784,869 to 4,786,383 _RS25145 LU632_RS25150: LU632_RS25150 - phage tail tube protein, at 4,786,393 to 4,786,749 _RS25150 LU632_RS25155: LU632_RS25155 - phage tail assembly protein, at 4,786,759 to 4,787,214 _RS25155 LU632_RS25160: LU632_RS25160 - tape measure protein, at 4,787,344 to 4,789,179 _RS25160 Position (kb) 4786 4787Strain fitness (log2 ratio) -2 -1 0 1 2at 4785.473 kb on - strand, within LU632_RS25145at 4785.475 kb on + strand, within LU632_RS25145at 4785.520 kb on + strand, within LU632_RS25145at 4785.592 kb on + strand, within LU632_RS25145at 4785.593 kb on - strand, within LU632_RS25145at 4785.593 kb on - strand, within LU632_RS25145at 4785.628 kb on - strand, within LU632_RS25145at 4785.669 kb on + strand, within LU632_RS25145at 4785.669 kb on + strand, within LU632_RS25145at 4785.796 kb on + strand, within LU632_RS25145at 4785.796 kb on + strand, within LU632_RS25145at 4785.797 kb on - strand, within LU632_RS25145at 4785.797 kb on - strand, within LU632_RS25145at 4785.797 kb on - strand, within LU632_RS25145at 4785.987 kb on - strand, within LU632_RS25145at 4786.048 kb on + strand, within LU632_RS25145at 4786.132 kb on - strand, within LU632_RS25145at 4786.276 kb on + strandat 4786.277 kb on - strandat 4786.277 kb on - strandat 4786.277 kb on - strandat 4786.336 kb on - strandat 4786.429 kb on + strand, within LU632_RS25150at 4786.429 kb on + strand, within LU632_RS25150at 4786.430 kb on - strand, within LU632_RS25150at 4786.430 kb on - strand, within LU632_RS25150at 4786.527 kb on + strand, within LU632_RS25150at 4786.527 kb on + strand, within LU632_RS25150at 4786.528 kb on - strand, within LU632_RS25150at 4786.740 kb on + strandat 4786.740 kb on + strandat 4786.741 kb on - strandat 4786.779 kb on + strandat 4786.782 kb on + strandat 4786.783 kb on - strandat 4786.909 kb on + strand, within LU632_RS25155at 4786.909 kb on + strand, within LU632_RS25155at 4786.948 kb on - strand, within LU632_RS25155at 4787.336 kb on + strandat 4787.357 kb on + strandat 4787.484 kb on + strandat 4787.579 kb on - strand, within LU632_RS25160at 4787.594 kb on + strand, within LU632_RS25160at 4787.595 kb on - strand, within LU632_RS25160at 4787.595 kb on - strand, within LU632_RS25160at 4787.598 kb on + strand, within LU632_RS25160at 4787.599 kb on - strand, within LU632_RS25160at 4787.599 kb on - strand, within LU632_RS25160at 4787.650 kb on + strand, within LU632_RS25160at 4787.748 kb on + strand, within LU632_RS25160

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA
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4,785,473 - LU632_RS25145 0.40 +0.0
4,785,475 + LU632_RS25145 0.40 +0.2
4,785,520 + LU632_RS25145 0.43 +0.6
4,785,592 + LU632_RS25145 0.48 -0.1
4,785,593 - LU632_RS25145 0.48 -0.4
4,785,593 - LU632_RS25145 0.48 +0.5
4,785,628 - LU632_RS25145 0.50 -0.6
4,785,669 + LU632_RS25145 0.53 -0.7
4,785,669 + LU632_RS25145 0.53 +1.0
4,785,796 + LU632_RS25145 0.61 +0.2
4,785,796 + LU632_RS25145 0.61 -0.6
4,785,797 - LU632_RS25145 0.61 -0.4
4,785,797 - LU632_RS25145 0.61 +0.1
4,785,797 - LU632_RS25145 0.61 +0.6
4,785,987 - LU632_RS25145 0.74 -0.1
4,786,048 + LU632_RS25145 0.78 -1.3
4,786,132 - LU632_RS25145 0.83 +1.0
4,786,276 + -2.0
4,786,277 - +2.1
4,786,277 - +0.5
4,786,277 - -0.7
4,786,336 - -1.1
4,786,429 + LU632_RS25150 0.10 +1.0
4,786,429 + LU632_RS25150 0.10 +0.4
4,786,430 - LU632_RS25150 0.10 -0.7
4,786,430 - LU632_RS25150 0.10 +0.7
4,786,527 + LU632_RS25150 0.38 +0.6
4,786,527 + LU632_RS25150 0.38 +1.7
4,786,528 - LU632_RS25150 0.38 +0.1
4,786,740 + -0.3
4,786,740 + +0.0
4,786,741 - +0.2
4,786,779 + +0.9
4,786,782 + -0.5
4,786,783 - +0.0
4,786,909 + LU632_RS25155 0.33 -1.9
4,786,909 + LU632_RS25155 0.33 -1.9
4,786,948 - LU632_RS25155 0.41 +0.6
4,787,336 + +2.2
4,787,357 + -1.7
4,787,484 + +0.0
4,787,579 - LU632_RS25160 0.13 -0.2
4,787,594 + LU632_RS25160 0.14 +1.4
4,787,595 - LU632_RS25160 0.14 -1.5
4,787,595 - LU632_RS25160 0.14 -0.6
4,787,598 + LU632_RS25160 0.14 -1.2
4,787,599 - LU632_RS25160 0.14 +0.5
4,787,599 - LU632_RS25160 0.14 +1.2
4,787,650 + LU632_RS25160 0.17 +0.7
4,787,748 + LU632_RS25160 0.22 -0.5

Or see this region's nucleotide sequence