Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24315

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
4,639,115	+				-0.5
4,639,122	+				-2.5
4,639,122	+				+1.3
4,639,122	+				-1.7
4,639,122	+				+0.3
4,639,123	-				+0.6
4,639,123	-				-0.7
4,639,123	-				-0.0
4,639,246	+				+1.6
4,639,246	+				-0.2
4,639,247	-				+0.3
4,639,247	-				-1.6
4,639,247	-				-0.3
4,639,247	-				+0.2
4,639,249	-				-0.7
4,639,359	+				+0.3
4,639,392	+				+2.9
4,639,437	+		LU632_RS24305	0.11	-0.2
4,639,531	-		LU632_RS24305	0.43	-0.4
4,639,532	+		LU632_RS24305	0.44	+0.4
4,639,533	-		LU632_RS24305	0.44	-1.9
4,639,533	-		LU632_RS24305	0.44	+0.4
4,639,533	-		LU632_RS24305	0.44	-1.3
4,639,534	+		LU632_RS24305	0.44	-0.1
4,639,620	+		LU632_RS24305	0.74	-0.8
4,639,641	+		LU632_RS24305	0.81	+1.0
4,639,642	-		LU632_RS24305	0.81	-1.7
4,639,643	+		LU632_RS24305	0.82	-0.5
4,639,643	+		LU632_RS24305	0.82	+2.4
4,639,644	-		LU632_RS24305	0.82	-0.3
4,639,644	-		LU632_RS24305	0.82	-0.5
4,639,644	-		LU632_RS24305	0.82	+0.0
4,639,644	-		LU632_RS24305	0.82	+1.0
4,639,647	+		LU632_RS24305	0.83	+0.3
4,639,647	+		LU632_RS24305	0.83	-0.7
4,639,647	+		LU632_RS24305	0.83	-0.5
4,639,647	+		LU632_RS24305	0.83	-0.1
4,639,648	-		LU632_RS24305	0.84	-1.1
4,639,679	+				-0.1
4,639,718	-				+1.6
4,639,731	-		LU632_RS24310	0.14	+0.6
4,639,732	+		LU632_RS24310	0.14	-1.2
4,639,740	+		LU632_RS24310	0.16	+2.0
4,639,749	+		LU632_RS24310	0.19	+1.7
4,639,875	+		LU632_RS24310	0.59	-0.7
4,639,875	+		LU632_RS24310	0.59	+0.5
4,639,875	+		LU632_RS24310	0.59	+0.4
4,639,876	-		LU632_RS24310	0.59	+1.3
4,639,879	+		LU632_RS24310	0.60	+0.1
4,639,880	-		LU632_RS24310	0.60	-1.2
4,639,881	+		LU632_RS24310	0.61	+0.7
4,640,004	-				+0.2
4,640,004	-				-0.2
4,640,013	+				-1.6
4,640,014	-				+1.6
4,640,077	-				+0.5
4,640,876	+				-0.8
4,640,876	+				-1.7
4,640,876	+				+1.0
4,640,877	-				+0.2
4,640,906	+				-0.5
4,640,910	+				+0.3
4,640,910	+				+0.2
4,640,965	+				+1.1
4,640,983	-				+0.5
4,640,998	+				+1.1
4,640,998	+				-0.7
4,640,998	+				+0.3
4,641,001	-				-0.7
4,641,026	-				-1.4
4,641,169	+		LU632_RS24320	0.48	+0.7
4,641,169	+		LU632_RS24320	0.48	+3.8
4,641,236	+		LU632_RS24320	0.70	-1.9
4,641,260	+		LU632_RS24320	0.78	-0.9