Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23410

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
4,461,235	+		LU632_RS23405	0.39	-0.9
4,461,734	+				+0.5
4,461,734	+				+0.9
4,461,735	-				-1.4
4,461,829	+				-0.2
4,461,972	+				+2.2
4,461,972	-				+1.0
4,461,973	-				-1.2
4,461,973	-				-0.7
4,462,011	-				-2.1
4,462,011	-				+0.9
4,462,034	-				-0.5
4,462,083	+				+1.2
4,462,084	-				+0.7
4,462,134	-				+1.9
4,463,440	+		LU632_RS23410	0.28	+3.2
4,463,440	+		LU632_RS23410	0.28	-1.8
4,463,440	+		LU632_RS23410	0.28	-0.4
4,463,442	+		LU632_RS23410	0.28	-1.3
4,463,442	+		LU632_RS23410	0.28	+0.4
4,463,623	+		LU632_RS23410	0.31	-1.3
4,463,634	+		LU632_RS23410	0.32	+0.1
4,464,048	-		LU632_RS23410	0.41	+0.7
4,464,380	+		LU632_RS23410	0.48	-0.4
4,464,497	-		LU632_RS23410	0.50	-2.7
4,464,663	+		LU632_RS23410	0.54	+0.4
4,464,680	-		LU632_RS23410	0.54	-0.7
4,464,897	+		LU632_RS23410	0.59	-0.6
4,465,079	-		LU632_RS23410	0.63	-0.6
4,465,183	+		LU632_RS23410	0.65	+4.2
4,465,638	-		LU632_RS23410	0.75	-1.3
4,466,511	+				-1.1
4,466,792	-				+0.9
4,466,989	-				+0.5
4,467,076	+				+0.9
4,467,145	+				-0.1
4,467,146	-				-0.4
4,467,194	-				-2.0