Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23320

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
4,442,576	-				+0.8
4,442,718	+				-1.0
4,442,719	-				+0.3
4,442,735	+				+0.2
4,442,736	-				+0.8
4,442,765	+				-0.4
4,442,766	-				+0.2
4,442,794	+				-1.2
4,442,794	+				+0.6
4,442,795	-				+0.2
4,442,795	-				-2.2
4,442,860	+				+0.3
4,442,873	+				-0.4
4,442,873	+				+0.5
4,442,873	+				+0.5
4,442,874	-				-0.8
4,442,874	-				+0.9
4,442,874	-				-0.6
4,442,901	+		LU632_RS23315	0.15	-0.2
4,442,902	-		LU632_RS23315	0.16	-2.1
4,442,906	-		LU632_RS23315	0.17	+1.0
4,442,917	+		LU632_RS23315	0.19	-0.3
4,443,002	-		LU632_RS23315	0.41	+1.4
4,443,043	+		LU632_RS23315	0.51	+0.5
4,443,044	-		LU632_RS23315	0.52	-1.0
4,443,044	-		LU632_RS23315	0.52	-1.2
4,443,045	+		LU632_RS23315	0.52	+0.3
4,443,045	+		LU632_RS23315	0.52	-1.6
4,443,045	+		LU632_RS23315	0.52	+0.1
4,443,045	+		LU632_RS23315	0.52	-1.0
4,443,045	+		LU632_RS23315	0.52	+0.4
4,443,045	+		LU632_RS23315	0.52	+0.6
4,443,046	-		LU632_RS23315	0.52	-2.0
4,443,046	-		LU632_RS23315	0.52	-0.5
4,443,088	-		LU632_RS23315	0.63	-0.7
4,443,172	+		LU632_RS23315	0.84	-1.9
4,443,172	+		LU632_RS23315	0.84	+1.8
4,443,172	+		LU632_RS23315	0.84	-0.4
4,443,174	+		LU632_RS23315	0.85	-0.6
4,443,174	+		LU632_RS23315	0.85	-1.4
4,443,174	+		LU632_RS23315	0.85	-0.0
4,443,174	+		LU632_RS23315	0.85	+0.2
4,443,175	-		LU632_RS23315	0.85	-2.0
4,443,175	-		LU632_RS23315	0.85	+1.3
4,443,175	-		LU632_RS23315	0.85	-0.1
4,443,175	-		LU632_RS23315	0.85	+1.0
4,443,175	-		LU632_RS23315	0.85	-0.0
4,443,175	-		LU632_RS23315	0.85	+0.1
4,443,175	-		LU632_RS23315	0.85	+1.4
4,443,229	+				+0.6
4,443,229	+				+1.6
4,443,296	+				-0.2
4,443,296	+				+0.9
4,443,296	+				+0.7
4,443,297	-				-0.5
4,443,297	-				+1.8
4,443,298	+				-1.2
4,443,299	-				-1.2
4,443,299	-				-0.8
4,443,299	-				-0.1
4,443,371	+				+0.1
4,443,372	-				-1.3
4,443,537	-		LU632_RS23320	0.13	+1.4
4,443,560	-		LU632_RS23320	0.16	+0.1
4,443,560	-		LU632_RS23320	0.16	+2.1
4,443,772	+		LU632_RS23320	0.41	+1.4
4,443,772	+		LU632_RS23320	0.41	+0.3
4,443,772	+		LU632_RS23320	0.41	+0.2
4,443,773	-		LU632_RS23320	0.41	+0.3
4,443,791	+		LU632_RS23320	0.43	+1.1
4,443,869	-		LU632_RS23320	0.52	+1.2
4,443,981	-		LU632_RS23320	0.65	+0.1
4,443,981	-		LU632_RS23320	0.65	+0.8
4,444,159	+		LU632_RS23320	0.86	+0.7
4,444,160	-		LU632_RS23320	0.86	-1.9
4,444,160	-		LU632_RS23320	0.86	+0.2
4,444,191	-		LU632_RS23320	0.90	+0.8
4,444,215	+				-0.3
4,444,215	+				-1.1
4,444,215	+				+0.6
4,444,215	+				-1.5
4,444,216	-				-0.2
4,444,216	-				+0.9
4,444,216	-				+3.0
4,444,216	-				+0.9
4,444,216	-				+0.5
4,444,216	-				+0.4
4,444,216	-				+0.3
4,444,216	-				-0.0
4,444,216	-				-1.4
4,444,216	-				-0.3
4,444,216	-				-0.6
4,444,216	-				+0.7
4,444,220	-				-0.3
4,444,263	-				+0.3
4,444,266	-				+0.8
4,444,806	+				+1.4
4,444,928	+		LU632_RS23325	0.25	+0.5
4,444,931	+		LU632_RS23325	0.26	-0.4
4,444,931	+		LU632_RS23325	0.26	+0.6
4,444,932	-		LU632_RS23325	0.27	+3.2
4,444,964	+		LU632_RS23325	0.44	-1.9
4,444,965	-		LU632_RS23325	0.44	-0.9
4,444,988	+		LU632_RS23325	0.57	-0.0
4,445,135	-				-0.0