Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22825

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
4,344,726	+				-0.5
4,344,727	-				-0.4
4,344,727	-				-0.7
4,344,776	+				-0.9
4,344,835	-				-2.1
4,344,965	-	ppiA	LU632_RS22820	0.20	-2.4
4,345,084	+	ppiA	LU632_RS22820	0.41	+0.3
4,345,084	+	ppiA	LU632_RS22820	0.41	+0.5
4,345,090	+	ppiA	LU632_RS22820	0.42	+0.0
4,345,148	-	ppiA	LU632_RS22820	0.52	-0.1
4,345,192	+	ppiA	LU632_RS22820	0.60	-1.6
4,345,193	-	ppiA	LU632_RS22820	0.60	+2.4
4,345,222	+	ppiA	LU632_RS22820	0.65	-0.6
4,345,229	-	ppiA	LU632_RS22820	0.66	-2.3
4,345,229	-	ppiA	LU632_RS22820	0.66	+1.6
4,345,230	+	ppiA	LU632_RS22820	0.66	-1.2
4,345,322	-	ppiA	LU632_RS22820	0.82	+0.7
4,345,411	+				+2.7
4,345,441	-				+1.2
4,345,509	+				-0.9
4,345,510	-				-0.4
4,345,525	+				-1.1
4,345,526	-				+0.6
4,345,531	+				+0.7
4,345,557	+				-0.6
4,345,558	-				+2.7
4,345,561	+				+0.4
4,345,561	+				-1.3
4,345,562	-				+0.8
4,345,563	+				-0.9
4,345,564	-				+0.5
4,345,585	+				+2.6
4,345,585	+				+1.5
4,345,585	+				-1.7
4,345,585	+				+0.3
4,345,585	+				-0.3
4,345,588	+				-0.1
4,345,614	+				-0.6
4,345,615	-				-0.3
4,345,615	-				+0.2
4,345,746	+				+0.5
4,345,746	+				-0.8
4,345,796	+				+0.9
4,345,797	-				-1.9
4,345,806	+				-0.9
4,345,807	-				+0.5
4,345,925	-	tsgA	LU632_RS22825	0.19	-1.3
4,345,943	-	tsgA	LU632_RS22825	0.21	-0.1
4,345,943	-	tsgA	LU632_RS22825	0.21	+1.3
4,346,011	+	tsgA	LU632_RS22825	0.26	+0.6
4,346,012	-	tsgA	LU632_RS22825	0.26	+3.4
4,346,020	+	tsgA	LU632_RS22825	0.27	+0.3
4,346,021	-	tsgA	LU632_RS22825	0.27	-1.1
4,346,070	+	tsgA	LU632_RS22825	0.31	+1.1
4,346,194	-	tsgA	LU632_RS22825	0.42	+1.7
4,346,201	+	tsgA	LU632_RS22825	0.42	+1.1
4,346,207	-	tsgA	LU632_RS22825	0.43	+0.4
4,346,346	+	tsgA	LU632_RS22825	0.55	+2.5
4,346,346	+	tsgA	LU632_RS22825	0.55	-0.3
4,346,346	+	tsgA	LU632_RS22825	0.55	+2.3
4,346,347	-	tsgA	LU632_RS22825	0.55	-0.4
4,346,347	-	tsgA	LU632_RS22825	0.55	-0.0
4,346,389	-	tsgA	LU632_RS22825	0.58	+0.7
4,346,397	-	tsgA	LU632_RS22825	0.59	-0.7
4,346,457	+	tsgA	LU632_RS22825	0.64	+1.5
4,346,458	-	tsgA	LU632_RS22825	0.64	-0.9
4,346,458	-	tsgA	LU632_RS22825	0.64	-1.1
4,346,458	-	tsgA	LU632_RS22825	0.64	+1.7
4,346,459	+	tsgA	LU632_RS22825	0.64	-0.6
4,346,459	+	tsgA	LU632_RS22825	0.64	-0.5
4,346,459	+	tsgA	LU632_RS22825	0.64	-0.5
4,346,459	+	tsgA	LU632_RS22825	0.64	+1.1
4,346,460	-	tsgA	LU632_RS22825	0.64	-0.3
4,346,460	-	tsgA	LU632_RS22825	0.64	+0.3
4,346,460	-	tsgA	LU632_RS22825	0.64	+1.7
4,346,460	-	tsgA	LU632_RS22825	0.64	-0.8
4,346,513	+	tsgA	LU632_RS22825	0.69	+0.8
4,346,519	+	tsgA	LU632_RS22825	0.69	-0.2
4,346,553	+	tsgA	LU632_RS22825	0.72	+0.8
4,346,567	+	tsgA	LU632_RS22825	0.73	+0.8
4,346,597	+	tsgA	LU632_RS22825	0.76	-1.5
4,346,627	+	tsgA	LU632_RS22825	0.78	+1.0
4,346,627	+	tsgA	LU632_RS22825	0.78	+0.1
4,346,628	-	tsgA	LU632_RS22825	0.78	-0.5
4,346,631	+	tsgA	LU632_RS22825	0.79	+0.5
4,346,631	+	tsgA	LU632_RS22825	0.79	-0.1
4,346,787	-				+1.7
4,346,816	+				+0.0
4,346,816	+				-1.3
4,346,816	+				-1.1
4,346,817	-				-0.3
4,346,817	-				-2.9
4,346,891	-				+0.1
4,346,965	+				-2.9
4,347,023	-				-1.2
4,347,108	-		LU632_RS22830	0.14	-2.1
4,347,108	-		LU632_RS22830	0.14	-0.8
4,347,108	-		LU632_RS22830	0.14	+0.2
4,347,126	+		LU632_RS22830	0.15	+0.4
4,347,126	+		LU632_RS22830	0.15	-1.1
4,347,127	-		LU632_RS22830	0.16	+0.5
4,347,127	-		LU632_RS22830	0.16	+0.3
4,347,132	+		LU632_RS22830	0.16	-0.1
4,347,132	+		LU632_RS22830	0.16	+0.2
4,347,220	+		LU632_RS22830	0.23	-0.7
4,347,221	-		LU632_RS22830	0.23	-0.1
4,347,232	-		LU632_RS22830	0.24	+1.6
4,347,232	-		LU632_RS22830	0.24	-0.4
4,347,232	-		LU632_RS22830	0.24	-0.6
4,347,252	-		LU632_RS22830	0.25	+0.5
4,347,344	+		LU632_RS22830	0.33	-1.1
4,347,344	+		LU632_RS22830	0.33	-1.2
4,347,349	-		LU632_RS22830	0.33	-0.9
4,347,349	-		LU632_RS22830	0.33	+0.3
4,347,438	+		LU632_RS22830	0.40	-0.6
4,347,438	+		LU632_RS22830	0.40	-1.8
4,347,438	+		LU632_RS22830	0.40	-0.4
4,347,438	+		LU632_RS22830	0.40	-1.5
4,347,438	+		LU632_RS22830	0.40	+0.1
4,347,438	+		LU632_RS22830	0.40	+0.1
4,347,439	-		LU632_RS22830	0.40	-2.4
4,347,439	-		LU632_RS22830	0.40	-0.0
4,347,439	-		LU632_RS22830	0.40	+4.0
4,347,440	+		LU632_RS22830	0.40	-0.1
4,347,440	+		LU632_RS22830	0.40	+0.3
4,347,453	-		LU632_RS22830	0.41	-0.6
4,347,582	+		LU632_RS22830	0.51	+0.2
4,347,583	-		LU632_RS22830	0.51	-1.1
4,347,583	-		LU632_RS22830	0.51	-1.8
4,347,587	+		LU632_RS22830	0.52	-0.8
4,347,587	+		LU632_RS22830	0.52	+0.6
4,347,590	+		LU632_RS22830	0.52	-0.7
4,347,591	-		LU632_RS22830	0.52	-1.1
4,347,591	-		LU632_RS22830	0.52	-2.7
4,347,741	-		LU632_RS22830	0.64	+0.5