Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22740

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
4,327,781	-	kefB	LU632_RS22735	0.45	+0.2
4,327,814	-	kefB	LU632_RS22735	0.47	+1.4
4,327,843	-	kefB	LU632_RS22735	0.49	+0.5
4,327,878	-	kefB	LU632_RS22735	0.51	+2.5
4,327,888	+	kefB	LU632_RS22735	0.51	-1.0
4,327,906	+	kefB	LU632_RS22735	0.52	-1.2
4,327,908	+	kefB	LU632_RS22735	0.52	-1.0
4,327,908	+	kefB	LU632_RS22735	0.52	-2.5
4,327,908	+	kefB	LU632_RS22735	0.52	-1.5
4,327,909	-	kefB	LU632_RS22735	0.52	-1.1
4,327,909	-	kefB	LU632_RS22735	0.52	-0.1
4,328,048	+	kefB	LU632_RS22735	0.60	+0.1
4,328,048	+	kefB	LU632_RS22735	0.60	-0.4
4,328,048	+	kefB	LU632_RS22735	0.60	-0.0
4,328,048	+	kefB	LU632_RS22735	0.60	+3.1
4,328,049	-	kefB	LU632_RS22735	0.60	-1.2
4,328,103	-	kefB	LU632_RS22735	0.63	+1.2
4,328,103	-	kefB	LU632_RS22735	0.63	-0.9
4,328,105	+	kefB	LU632_RS22735	0.63	-0.1
4,328,150	-	kefB	LU632_RS22735	0.66	+0.0
4,328,150	-	kefB	LU632_RS22735	0.66	-2.3
4,328,219	+	kefB	LU632_RS22735	0.69	+1.5
4,328,623	+				+1.3
4,328,717	+				+1.5
4,328,717	+				-0.6
4,328,718	-				+0.4
4,328,718	-				-0.6
4,328,865	+	kefG	LU632_RS22740	0.17	-0.2
4,328,865	+	kefG	LU632_RS22740	0.17	-1.6
4,328,866	-	kefG	LU632_RS22740	0.17	-0.5
4,328,869	+	kefG	LU632_RS22740	0.18	-0.4
4,328,930	-	kefG	LU632_RS22740	0.29	-0.0
4,328,930	-	kefG	LU632_RS22740	0.29	+0.3
4,328,944	+	kefG	LU632_RS22740	0.31	-1.6
4,328,944	+	kefG	LU632_RS22740	0.31	-0.9
4,328,944	+	kefG	LU632_RS22740	0.31	+0.4
4,328,944	+	kefG	LU632_RS22740	0.31	+0.9
4,328,944	+	kefG	LU632_RS22740	0.31	-2.2
4,328,944	+	kefG	LU632_RS22740	0.31	-2.2
4,328,944	+	kefG	LU632_RS22740	0.31	-1.5
4,328,944	+	kefG	LU632_RS22740	0.31	+0.5
4,328,945	-	kefG	LU632_RS22740	0.32	-0.8
4,328,945	-	kefG	LU632_RS22740	0.32	-0.8
4,328,945	-	kefG	LU632_RS22740	0.32	+0.6
4,328,945	-	kefG	LU632_RS22740	0.32	-1.5
4,328,945	-	kefG	LU632_RS22740	0.32	-0.0
4,328,945	-	kefG	LU632_RS22740	0.32	+2.4
4,328,945	-	kefG	LU632_RS22740	0.32	-1.3
4,328,946	+	kefG	LU632_RS22740	0.32	-0.6
4,328,946	+	kefG	LU632_RS22740	0.32	-1.5
4,328,947	-	kefG	LU632_RS22740	0.32	+0.9
4,329,103	+	kefG	LU632_RS22740	0.60	-1.4
4,329,103	+	kefG	LU632_RS22740	0.60	+0.5
4,329,104	-	kefG	LU632_RS22740	0.60	+4.5
4,329,104	-	kefG	LU632_RS22740	0.60	-0.3
4,329,104	-	kefG	LU632_RS22740	0.60	+1.0
4,329,104	-	kefG	LU632_RS22740	0.60	-0.6
4,329,104	-	kefG	LU632_RS22740	0.60	+1.3
4,329,105	+	kefG	LU632_RS22740	0.61	-0.5
4,329,105	+	kefG	LU632_RS22740	0.61	-0.9
4,329,105	+	kefG	LU632_RS22740	0.61	-0.5
4,329,106	-	kefG	LU632_RS22740	0.61	-0.1
4,329,106	-	kefG	LU632_RS22740	0.61	+1.0
4,329,109	+	kefG	LU632_RS22740	0.61	+0.8
4,329,109	+	kefG	LU632_RS22740	0.61	+0.9
4,329,110	-	kefG	LU632_RS22740	0.61	+0.2
4,329,110	-	kefG	LU632_RS22740	0.61	-1.5
4,329,110	-	kefG	LU632_RS22740	0.61	+0.6
4,329,111	+	kefG	LU632_RS22740	0.62	-2.8
4,329,150	-	kefG	LU632_RS22740	0.69	-1.8
4,329,172	+	kefG	LU632_RS22740	0.73	-2.6
4,329,291	+				+0.3
4,329,291	+				-1.5
4,329,291	+				+0.1
4,329,292	-				-0.4
4,329,292	-				-0.2
4,329,402	-				-0.5
4,329,405	+				+0.3
4,329,406	-				-0.1
4,329,425	+				-0.3
4,329,425	+				-0.2
4,329,426	-				-0.1
4,329,426	-				-0.5
4,329,427	+				+0.0
4,329,437	-				+0.5
4,329,470	+				+1.0
4,329,478	+				-1.6
4,329,509	+				+0.4
4,329,509	+				-1.5
4,329,530	-				+0.5
4,329,538	+				-0.1
4,329,538	+				-0.3
4,329,542	-				+1.5
4,329,550	+				-0.5
4,329,576	+				+3.5
4,329,576	+				-0.4
4,329,577	-				-0.2
4,329,577	-				+0.7
4,329,622	+				-0.9
4,329,691	+				-0.1
4,329,692	-				-0.1
4,329,702	+				+1.6
4,329,722	-				-1.1
4,329,722	-				-0.4
4,329,723	-				-0.1
4,329,797	+		LU632_RS22745	0.13	-0.4
4,329,797	+		LU632_RS22745	0.13	+1.3
4,329,798	-		LU632_RS22745	0.13	-0.8
4,329,861	+		LU632_RS22745	0.16	+0.5
4,329,862	-		LU632_RS22745	0.16	+0.5
4,329,924	+		LU632_RS22745	0.20	+0.4
4,329,925	-		LU632_RS22745	0.20	-1.1
4,329,925	-		LU632_RS22745	0.20	+2.3
4,329,978	+		LU632_RS22745	0.22	+0.3
4,329,978	+		LU632_RS22745	0.22	-0.5
4,330,230	-		LU632_RS22745	0.36	-1.5
4,330,230	-		LU632_RS22745	0.36	-0.4
4,330,241	+		LU632_RS22745	0.36	-0.2
4,330,242	-		LU632_RS22745	0.36	-0.1