Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22355 and LU632_RS22360 are separated by 79 nucleotides LU632_RS22360 and pgi are separated by 541 nucleotides pgi and LU632_RS22370 are separated by 164 nucleotides LU632_RS22370 and lysC are separated by 563 nucleotides
LU632_RS22355: LU632_RS22355 - YjbF family lipoprotein, at 4,269,577 to 4,270,224
_RS22355
LU632_RS22360: LU632_RS22360 - exopolysaccharide production protein YjbE, at 4,270,304 to 4,270,561
_RS22360
LU632_RS22365: pgi - glucose-6-phosphate isomerase, at 4,271,103 to 4,272,752
pgi
LU632_RS22370: LU632_RS22370 - hypothetical protein, at 4,272,917 to 4,273,075
_RS22370
LU632_RS22375: lysC - lysine-sensitive aspartokinase 3, at 4,273,639 to 4,274,994
lysC
Position (kb) 4271
4272
4273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4270.108 kb on + strand, within LU632_RS22355 at 4270.156 kb on - strand, within LU632_RS22355 at 4270.198 kb on + strand at 4270.198 kb on + strand at 4270.199 kb on - strand at 4270.214 kb on - strand at 4270.214 kb on - strand at 4270.215 kb on + strand at 4270.217 kb on + strand at 4270.217 kb on + strand at 4270.218 kb on - strand at 4270.218 kb on - strand at 4270.257 kb on + strand at 4270.285 kb on + strand at 4270.291 kb on + strand at 4270.296 kb on + strand at 4270.296 kb on + strand at 4270.524 kb on + strand, within LU632_RS22360 at 4270.524 kb on + strand, within LU632_RS22360 at 4270.525 kb on - strand, within LU632_RS22360 at 4270.527 kb on - strand, within LU632_RS22360 at 4270.717 kb on - strand at 4271.009 kb on - strand at 4271.009 kb on - strand at 4271.249 kb on + strand at 4271.250 kb on - strand at 4271.287 kb on + strand, within pgi at 4271.385 kb on - strand, within pgi at 4271.580 kb on - strand, within pgi at 4271.674 kb on + strand, within pgi at 4271.674 kb on + strand, within pgi at 4271.693 kb on + strand, within pgi at 4271.711 kb on - strand, within pgi at 4271.731 kb on + strand, within pgi at 4271.731 kb on + strand, within pgi at 4271.731 kb on + strand, within pgi at 4271.741 kb on - strand, within pgi at 4271.750 kb on + strand, within pgi at 4271.750 kb on + strand, within pgi at 4271.783 kb on - strand, within pgi at 4272.021 kb on - strand, within pgi at 4272.122 kb on + strand, within pgi at 4272.207 kb on - strand, within pgi at 4272.236 kb on + strand, within pgi at 4272.263 kb on + strand, within pgi at 4272.263 kb on + strand, within pgi at 4272.264 kb on - strand, within pgi at 4272.328 kb on + strand, within pgi at 4272.329 kb on - strand, within pgi at 4272.435 kb on - strand, within pgi at 4272.438 kb on - strand, within pgi at 4272.783 kb on + strand at 4272.800 kb on + strand at 4272.800 kb on + strand at 4272.800 kb on + strand at 4272.801 kb on - strand at 4272.801 kb on - strand at 4272.801 kb on - strand at 4272.911 kb on - strand at 4273.051 kb on - strand, within LU632_RS22370 at 4273.184 kb on - strand at 4273.189 kb on - strand at 4273.253 kb on + strand at 4273.253 kb on + strand at 4273.268 kb on - strand at 4273.380 kb on + strand at 4273.466 kb on + strand at 4273.552 kb on - strand at 4273.613 kb on + strand at 4273.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 4,270,108 + LU632_RS22355 0.82 +0.5 4,270,156 - LU632_RS22355 0.89 +0.5 4,270,198 + -0.1 4,270,198 + -1.8 4,270,199 - +1.3 4,270,214 - -0.0 4,270,214 - -1.1 4,270,215 + +0.7 4,270,217 + -0.1 4,270,217 + -0.4 4,270,218 - +0.6 4,270,218 - -0.5 4,270,257 + -0.3 4,270,285 + +0.5 4,270,291 + +0.4 4,270,296 + -0.5 4,270,296 + -0.4 4,270,524 + LU632_RS22360 0.85 +0.2 4,270,524 + LU632_RS22360 0.85 +0.3 4,270,525 - LU632_RS22360 0.86 -2.9 4,270,527 - LU632_RS22360 0.86 +0.4 4,270,717 - +1.2 4,271,009 - -1.6 4,271,009 - +1.7 4,271,249 + -0.2 4,271,250 - +1.0 4,271,287 + pgi LU632_RS22365 0.11 +2.5 4,271,385 - pgi LU632_RS22365 0.17 +2.3 4,271,580 - pgi LU632_RS22365 0.29 +0.3 4,271,674 + pgi LU632_RS22365 0.35 +1.1 4,271,674 + pgi LU632_RS22365 0.35 +2.8 4,271,693 + pgi LU632_RS22365 0.36 +0.9 4,271,711 - pgi LU632_RS22365 0.37 +2.7 4,271,731 + pgi LU632_RS22365 0.38 -0.6 4,271,731 + pgi LU632_RS22365 0.38 +1.5 4,271,731 + pgi LU632_RS22365 0.38 -0.2 4,271,741 - pgi LU632_RS22365 0.39 +1.6 4,271,750 + pgi LU632_RS22365 0.39 -0.5 4,271,750 + pgi LU632_RS22365 0.39 +1.6 4,271,783 - pgi LU632_RS22365 0.41 +0.0 4,272,021 - pgi LU632_RS22365 0.56 -0.1 4,272,122 + pgi LU632_RS22365 0.62 +0.8 4,272,207 - pgi LU632_RS22365 0.67 +0.7 4,272,236 + pgi LU632_RS22365 0.69 -1.9 4,272,263 + pgi LU632_RS22365 0.70 +0.7 4,272,263 + pgi LU632_RS22365 0.70 +2.6 4,272,264 - pgi LU632_RS22365 0.70 -0.7 4,272,328 + pgi LU632_RS22365 0.74 +1.8 4,272,329 - pgi LU632_RS22365 0.74 -0.3 4,272,435 - pgi LU632_RS22365 0.81 -1.0 4,272,438 - pgi LU632_RS22365 0.81 +3.1 4,272,783 + +0.4 4,272,800 + -0.1 4,272,800 + -0.3 4,272,800 + -1.1 4,272,801 - +1.9 4,272,801 - -0.2 4,272,801 - +0.1 4,272,911 - -0.5 4,273,051 - LU632_RS22370 0.84 +2.1 4,273,184 - -0.0 4,273,189 - +0.1 4,273,253 + -1.1 4,273,253 + -0.5 4,273,268 - -1.0 4,273,380 + -0.9 4,273,466 + +1.2 4,273,552 - +0.7 4,273,613 + -0.6 4,273,629 - +0.2
Or see this region's nucleotide sequence