Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21945

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
4,191,638	+		LU632_RS21940	0.42	-3.0
4,191,828	-		LU632_RS21940	0.58	-0.6
4,191,940	-		LU632_RS21940	0.68	+0.3
4,191,988	+		LU632_RS21940	0.72	-2.3
4,192,189	+		LU632_RS21940	0.90	-1.5
4,192,214	+				-1.0
4,192,296	+				-1.1
4,192,302	+				+1.7
4,192,426	-				+0.5
4,192,513	+				+1.9
4,192,514	-				+0.3
4,192,544	+				-1.6
4,192,623	+		LU632_RS21945	0.13	+1.2
4,192,623	+		LU632_RS21945	0.13	+0.4
4,192,705	-		LU632_RS21945	0.23	-1.8
4,192,738	+		LU632_RS21945	0.27	+0.8
4,192,804	+		LU632_RS21945	0.34	+0.7
4,192,804	+		LU632_RS21945	0.34	-1.0
4,192,805	-		LU632_RS21945	0.34	-0.4
4,192,805	-		LU632_RS21945	0.34	-0.2
4,192,872	+		LU632_RS21945	0.42	-2.3
4,192,969	+		LU632_RS21945	0.53	+1.3
4,193,231	-		LU632_RS21945	0.83	-0.5
4,193,237	+		LU632_RS21945	0.84	+0.1
4,193,306	+				-1.3
4,193,307	-				+0.4
4,193,311	-				-1.0
4,193,311	-				+1.9
4,193,311	-				+0.4
4,193,311	-				-0.8
4,193,323	+				-0.2
4,193,323	+				+0.1
4,193,324	-				-0.3
4,193,324	-				-0.6
4,193,351	-				+2.2
4,193,352	+				-1.6
4,193,353	-				-0.4
4,193,377	+				-0.3
4,193,377	+				-2.0
4,193,378	-				+4.6
4,193,378	-				+0.7
4,193,378	-				+0.8
4,193,379	+				+0.0
4,193,379	+				-0.4
4,193,380	-				-0.8
4,193,445	-				+1.3
4,193,445	-				-1.1
4,193,446	+				-0.9
4,193,447	-				+1.0
4,193,540	+				+1.1
4,193,552	+				+2.9
4,193,656	+				-0.0
4,193,656	+				+0.0
4,193,656	+				-1.0
4,193,677	+				+0.2
4,193,693	-				+1.4
4,193,693	-				+0.2
4,193,694	+				+0.1
4,193,694	+				+0.1
4,193,695	-				-2.0
4,193,699	-				+2.0
4,193,778	+				-0.5
4,193,808	+				+0.2
4,193,809	-				-0.0
4,193,809	-				+0.8
4,193,809	-				+0.7
4,193,809	-				+0.7
4,193,820	-				+1.1
4,193,831	+				-0.5
4,193,859	+				-0.0
4,193,875	-				+0.7
4,193,902	+				-0.0
4,193,903	-				+0.1
4,193,951	+				-0.3
4,193,951	+				-0.5
4,193,952	-				+1.2
4,194,060	+	rfaQ	LU632_RS21950	0.14	-0.6
4,194,062	+	rfaQ	LU632_RS21950	0.14	-0.1
4,194,156	-	rfaQ	LU632_RS21950	0.23	-0.5
4,194,201	+	rfaQ	LU632_RS21950	0.27	-0.0
4,194,304	+	rfaQ	LU632_RS21950	0.37	-1.5
4,194,365	+	rfaQ	LU632_RS21950	0.42	+0.7
4,194,370	+	rfaQ	LU632_RS21950	0.43	-0.0