Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhjD and LU632_RS21820 overlap by 6 nucleotides LU632_RS21820 and LU632_RS21825 are separated by 85 nucleotides
LU632_RS21815: yhjD - inner membrane protein YhjD, at 4,167,766 to 4,168,779
yhjD
LU632_RS21820: LU632_RS21820 - CDP-diacylglycerol diphosphatase, at 4,168,774 to 4,169,532
_RS21820
LU632_RS21825: LU632_RS21825 - IS5 family transposase, at 4,169,618 to 4,170,470
_RS21825
Position (kb) 4168
4169
4170 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4167.777 kb on + strand at 4167.816 kb on + strand at 4167.816 kb on + strand at 4167.845 kb on + strand at 4167.846 kb on - strand at 4167.846 kb on - strand at 4167.915 kb on + strand, within yhjD at 4167.936 kb on + strand, within yhjD at 4167.936 kb on + strand, within yhjD at 4167.977 kb on - strand, within yhjD at 4167.977 kb on - strand, within yhjD at 4168.058 kb on + strand, within yhjD at 4168.058 kb on + strand, within yhjD at 4168.077 kb on + strand, within yhjD at 4168.077 kb on + strand, within yhjD at 4168.128 kb on + strand, within yhjD at 4168.263 kb on + strand, within yhjD at 4168.263 kb on + strand, within yhjD at 4168.264 kb on - strand, within yhjD at 4168.294 kb on - strand, within yhjD at 4168.528 kb on - strand, within yhjD at 4168.566 kb on - strand, within yhjD at 4168.588 kb on - strand, within yhjD at 4168.591 kb on - strand, within yhjD at 4168.591 kb on - strand, within yhjD at 4168.672 kb on + strand, within yhjD at 4168.762 kb on - strand at 4168.782 kb on + strand at 4168.783 kb on - strand at 4168.783 kb on - strand at 4168.783 kb on - strand at 4168.845 kb on + strand at 4168.851 kb on + strand, within LU632_RS21820 at 4168.852 kb on - strand, within LU632_RS21820 at 4168.852 kb on - strand, within LU632_RS21820 at 4168.910 kb on + strand, within LU632_RS21820 at 4168.910 kb on + strand, within LU632_RS21820 at 4168.910 kb on + strand, within LU632_RS21820 at 4168.911 kb on - strand, within LU632_RS21820 at 4168.911 kb on - strand, within LU632_RS21820 at 4169.100 kb on + strand, within LU632_RS21820 at 4169.106 kb on + strand, within LU632_RS21820 at 4169.198 kb on + strand, within LU632_RS21820 at 4169.198 kb on + strand, within LU632_RS21820 at 4169.198 kb on + strand, within LU632_RS21820 at 4169.198 kb on + strand, within LU632_RS21820 at 4169.199 kb on - strand, within LU632_RS21820 at 4169.199 kb on - strand, within LU632_RS21820 at 4169.199 kb on - strand, within LU632_RS21820 at 4169.199 kb on - strand, within LU632_RS21820 at 4169.199 kb on - strand, within LU632_RS21820 at 4169.199 kb on - strand, within LU632_RS21820 at 4169.232 kb on + strand, within LU632_RS21820 at 4169.336 kb on + strand, within LU632_RS21820 at 4169.336 kb on + strand, within LU632_RS21820 at 4169.337 kb on - strand, within LU632_RS21820 at 4169.342 kb on + strand, within LU632_RS21820 at 4169.515 kb on - strand at 4169.579 kb on + strand at 4169.582 kb on - strand at 4169.601 kb on + strand at 4169.604 kb on - strand at 4169.624 kb on - strand at 4169.686 kb on + strand at 4169.699 kb on - strand at 4169.871 kb on - strand, within LU632_RS21825 at 4169.871 kb on - strand, within LU632_RS21825 at 4169.871 kb on - strand, within LU632_RS21825 at 4170.490 kb on - strand at 4170.490 kb on - strand at 4170.505 kb on + strand at 4170.506 kb on - strand at 4170.507 kb on + strand at 4170.507 kb on + strand at 4170.507 kb on + strand at 4170.508 kb on - strand at 4170.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 4,167,777 + -1.7 4,167,816 + +1.2 4,167,816 + +0.4 4,167,845 + +0.4 4,167,846 - +1.0 4,167,846 - -2.4 4,167,915 + yhjD LU632_RS21815 0.15 -0.4 4,167,936 + yhjD LU632_RS21815 0.17 +0.2 4,167,936 + yhjD LU632_RS21815 0.17 +0.2 4,167,977 - yhjD LU632_RS21815 0.21 +1.5 4,167,977 - yhjD LU632_RS21815 0.21 -0.7 4,168,058 + yhjD LU632_RS21815 0.29 +1.0 4,168,058 + yhjD LU632_RS21815 0.29 +1.0 4,168,077 + yhjD LU632_RS21815 0.31 -0.4 4,168,077 + yhjD LU632_RS21815 0.31 +0.1 4,168,128 + yhjD LU632_RS21815 0.36 +1.3 4,168,263 + yhjD LU632_RS21815 0.49 +0.6 4,168,263 + yhjD LU632_RS21815 0.49 -0.7 4,168,264 - yhjD LU632_RS21815 0.49 -0.6 4,168,294 - yhjD LU632_RS21815 0.52 +1.7 4,168,528 - yhjD LU632_RS21815 0.75 +4.2 4,168,566 - yhjD LU632_RS21815 0.79 +0.9 4,168,588 - yhjD LU632_RS21815 0.81 +2.0 4,168,591 - yhjD LU632_RS21815 0.81 +2.5 4,168,591 - yhjD LU632_RS21815 0.81 +0.5 4,168,672 + yhjD LU632_RS21815 0.89 +1.5 4,168,762 - +2.0 4,168,782 + -1.3 4,168,783 - -0.3 4,168,783 - -0.1 4,168,783 - -0.1 4,168,845 + -1.2 4,168,851 + LU632_RS21820 0.10 -1.0 4,168,852 - LU632_RS21820 0.10 +0.1 4,168,852 - LU632_RS21820 0.10 +1.5 4,168,910 + LU632_RS21820 0.18 +1.1 4,168,910 + LU632_RS21820 0.18 -0.8 4,168,910 + LU632_RS21820 0.18 -1.0 4,168,911 - LU632_RS21820 0.18 +0.2 4,168,911 - LU632_RS21820 0.18 -0.1 4,169,100 + LU632_RS21820 0.43 -0.2 4,169,106 + LU632_RS21820 0.44 +1.5 4,169,198 + LU632_RS21820 0.56 +0.7 4,169,198 + LU632_RS21820 0.56 +0.0 4,169,198 + LU632_RS21820 0.56 -0.4 4,169,198 + LU632_RS21820 0.56 -0.7 4,169,199 - LU632_RS21820 0.56 +0.5 4,169,199 - LU632_RS21820 0.56 +0.2 4,169,199 - LU632_RS21820 0.56 -2.3 4,169,199 - LU632_RS21820 0.56 -0.6 4,169,199 - LU632_RS21820 0.56 -0.3 4,169,199 - LU632_RS21820 0.56 +0.3 4,169,232 + LU632_RS21820 0.60 -2.2 4,169,336 + LU632_RS21820 0.74 +1.4 4,169,336 + LU632_RS21820 0.74 -0.8 4,169,337 - LU632_RS21820 0.74 +1.5 4,169,342 + LU632_RS21820 0.75 -1.0 4,169,515 - -1.8 4,169,579 + -0.2 4,169,582 - +0.2 4,169,601 + -0.2 4,169,604 - -0.5 4,169,624 - -1.6 4,169,686 + +0.7 4,169,699 - -0.5 4,169,871 - LU632_RS21825 0.30 -0.8 4,169,871 - LU632_RS21825 0.30 +1.2 4,169,871 - LU632_RS21825 0.30 -0.5 4,170,490 - +0.6 4,170,490 - -1.0 4,170,505 + -1.5 4,170,506 - -0.6 4,170,507 + +0.0 4,170,507 + +1.5 4,170,507 + -0.1 4,170,508 - -0.5 4,170,508 - +1.2
Or see this region's nucleotide sequence