Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21315

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
4,070,731	+				+1.5
4,070,732	-				-0.4
4,070,732	-				-2.0
4,070,805	-				+1.9
4,070,826	+				+0.4
4,070,826	+				-0.5
4,070,827	-				+0.8
4,070,831	+				+2.1
4,071,014	-				-0.8
4,071,017	+				-0.2
4,071,041	-				+1.7
4,071,044	-				-2.1
4,071,050	-				+0.2
4,071,050	-				-0.9
4,071,220	-				+1.0
4,071,332	-				-0.6
4,071,356	+				+0.1
4,071,533	-				-2.1
4,071,537	-				-2.1
4,071,537	-				-0.4
4,071,537	-				-1.0
4,071,561	+				+3.7
4,071,606	+				+0.2
4,071,607	-				-0.1
4,071,607	-				+0.5
4,071,607	-				-1.4
4,071,778	+				+0.1
4,071,778	+				+0.1
4,071,778	+				+1.1
4,071,778	+				-0.4
4,071,778	+				-0.2
4,071,778	+				-0.2
4,071,778	+				-0.6
4,071,778	+				-1.3
4,071,778	+				+0.7
4,071,976	+				+2.5
4,072,129	+				+0.5
4,072,129	+				-0.1
4,072,129	+				-1.0
4,072,129	+				-0.5
4,072,130	-				+0.4
4,072,130	-				-1.3
4,072,191	+	gltB	LU632_RS21315	0.11	+0.1
4,072,192	-	gltB	LU632_RS21315	0.11	+1.1
4,072,230	-	gltB	LU632_RS21315	0.11	-0.0
4,072,230	-	gltB	LU632_RS21315	0.11	+0.6
4,072,269	-	gltB	LU632_RS21315	0.12	-0.2
4,072,272	+	gltB	LU632_RS21315	0.12	-0.9
4,072,272	+	gltB	LU632_RS21315	0.12	+0.2
4,072,287	-	gltB	LU632_RS21315	0.13	-0.8
4,072,379	+	gltB	LU632_RS21315	0.15	+1.0
4,072,380	-	gltB	LU632_RS21315	0.15	+0.8
4,072,416	+	gltB	LU632_RS21315	0.16	+0.2
4,072,484	+	gltB	LU632_RS21315	0.17	-1.0
4,072,485	-	gltB	LU632_RS21315	0.17	+0.1
4,072,567	-	gltB	LU632_RS21315	0.19	+0.3
4,072,783	+	gltB	LU632_RS21315	0.24	-0.6
4,072,798	-	gltB	LU632_RS21315	0.24	+1.6
4,072,824	-	gltB	LU632_RS21315	0.25	-0.3
4,072,844	+	gltB	LU632_RS21315	0.25	+1.6
4,072,845	-	gltB	LU632_RS21315	0.25	+0.1
4,072,846	+	gltB	LU632_RS21315	0.25	-1.6
4,072,847	-	gltB	LU632_RS21315	0.25	+1.6
4,072,854	+	gltB	LU632_RS21315	0.25	+0.3
4,072,936	+	gltB	LU632_RS21315	0.27	-0.0
4,072,981	-	gltB	LU632_RS21315	0.28	+0.2
4,072,981	-	gltB	LU632_RS21315	0.28	-0.9
4,072,982	+	gltB	LU632_RS21315	0.28	-0.3
4,072,983	-	gltB	LU632_RS21315	0.28	-1.3
4,073,069	+	gltB	LU632_RS21315	0.30	-1.4
4,073,070	-	gltB	LU632_RS21315	0.30	+0.5
4,073,126	+	gltB	LU632_RS21315	0.32	+0.4
4,073,127	-	gltB	LU632_RS21315	0.32	-0.3
4,073,224	-	gltB	LU632_RS21315	0.34	-0.1
4,073,256	-	gltB	LU632_RS21315	0.34	+0.5
4,073,372	+	gltB	LU632_RS21315	0.37	-0.0
4,073,373	-	gltB	LU632_RS21315	0.37	-1.3
4,073,433	+	gltB	LU632_RS21315	0.38	+2.1
4,073,456	+	gltB	LU632_RS21315	0.39	+0.7
4,073,569	+	gltB	LU632_RS21315	0.41	+0.1
4,073,569	+	gltB	LU632_RS21315	0.41	-1.0
4,073,618	-	gltB	LU632_RS21315	0.43	-1.8
4,073,633	-	gltB	LU632_RS21315	0.43	+1.3
4,073,636	+	gltB	LU632_RS21315	0.43	-1.4
4,073,637	-	gltB	LU632_RS21315	0.43	+0.2
4,073,790	-	gltB	LU632_RS21315	0.46	-0.9
4,073,792	+	gltB	LU632_RS21315	0.46	-0.6
4,073,846	-	gltB	LU632_RS21315	0.48	+0.5
4,073,846	-	gltB	LU632_RS21315	0.48	+0.2
4,073,847	+	gltB	LU632_RS21315	0.48	+0.1
4,073,848	-	gltB	LU632_RS21315	0.48	+1.6
4,073,849	+	gltB	LU632_RS21315	0.48	-2.1
4,073,849	+	gltB	LU632_RS21315	0.48	+0.7
4,073,849	+	gltB	LU632_RS21315	0.48	+3.0
4,073,855	+	gltB	LU632_RS21315	0.48	-0.3
4,073,856	-	gltB	LU632_RS21315	0.48	+0.1
4,073,973	-	gltB	LU632_RS21315	0.51	-0.8
4,073,985	+	gltB	LU632_RS21315	0.51	+0.1
4,074,072	+	gltB	LU632_RS21315	0.53	-0.1
4,074,073	-	gltB	LU632_RS21315	0.53	+0.0
4,074,090	+	gltB	LU632_RS21315	0.53	-0.3
4,074,099	+	gltB	LU632_RS21315	0.53	+0.7
4,074,099	+	gltB	LU632_RS21315	0.53	+0.9
4,074,100	-	gltB	LU632_RS21315	0.53	+0.6
4,074,113	-	gltB	LU632_RS21315	0.54	-0.2
4,074,124	+	gltB	LU632_RS21315	0.54	+0.8
4,074,279	+	gltB	LU632_RS21315	0.57	+0.0
4,074,427	+	gltB	LU632_RS21315	0.61	+0.2
4,074,427	+	gltB	LU632_RS21315	0.61	+0.7
4,074,438	-	gltB	LU632_RS21315	0.61	-0.1
4,074,438	-	gltB	LU632_RS21315	0.61	+1.5
4,074,570	+	gltB	LU632_RS21315	0.64	+0.1
4,074,570	+	gltB	LU632_RS21315	0.64	-1.0
4,074,570	+	gltB	LU632_RS21315	0.64	+0.6
4,074,570	+	gltB	LU632_RS21315	0.64	-0.9
4,074,571	+	gltB	LU632_RS21315	0.64	+0.3
4,074,571	-	gltB	LU632_RS21315	0.64	+2.5
4,074,571	-	gltB	LU632_RS21315	0.64	+3.9
4,074,571	-	gltB	LU632_RS21315	0.64	-0.6
4,074,571	-	gltB	LU632_RS21315	0.64	+0.4
4,074,635	+	gltB	LU632_RS21315	0.65	+0.1
4,074,635	+	gltB	LU632_RS21315	0.65	+1.0
4,074,635	+	gltB	LU632_RS21315	0.65	+1.3
4,074,636	-	gltB	LU632_RS21315	0.65	+0.3
4,074,640	-	gltB	LU632_RS21315	0.66	-0.3
4,074,665	+	gltB	LU632_RS21315	0.66	+0.1
4,074,765	+	gltB	LU632_RS21315	0.68	-0.6
4,074,765	-	gltB	LU632_RS21315	0.68	+0.1
4,074,766	-	gltB	LU632_RS21315	0.68	-1.0
4,074,792	+	gltB	LU632_RS21315	0.69	+0.2
4,074,830	+	gltB	LU632_RS21315	0.70	-0.0
4,074,831	-	gltB	LU632_RS21315	0.70	+0.3
4,074,865	+	gltB	LU632_RS21315	0.71	+1.3
4,074,866	-	gltB	LU632_RS21315	0.71	+1.0
4,074,950	+	gltB	LU632_RS21315	0.72	+0.5
4,074,953	+	gltB	LU632_RS21315	0.73	-0.4
4,074,954	-	gltB	LU632_RS21315	0.73	-0.2
4,074,954	-	gltB	LU632_RS21315	0.73	+0.8
4,074,954	-	gltB	LU632_RS21315	0.73	-0.1
4,075,027	-	gltB	LU632_RS21315	0.74	+0.7
4,075,049	+	gltB	LU632_RS21315	0.75	+0.1
4,075,131	+	gltB	LU632_RS21315	0.77	-0.1
4,075,131	+	gltB	LU632_RS21315	0.77	-1.3
4,075,219	+	gltB	LU632_RS21315	0.78	-0.3
4,075,358	+	gltB	LU632_RS21315	0.82	+1.2
4,075,358	+	gltB	LU632_RS21315	0.82	-1.8
4,075,359	-	gltB	LU632_RS21315	0.82	+1.1
4,075,609	+	gltB	LU632_RS21315	0.87	+0.5
4,075,610	+	gltB	LU632_RS21315	0.87	-1.9
4,075,769	+				-2.1
4,075,822	-				-0.4
4,075,823	+				+0.1
4,075,823	+				+0.2
4,075,823	+				-0.4
4,075,823	+				-1.1
4,075,824	-				-2.8
4,075,824	-				+0.6
4,075,824	-				+0.5
4,075,835	+				-1.3
4,075,880	+				-1.6
4,075,899	+				-0.0
4,075,957	+				-0.7
4,075,958	-				+0.7
4,075,961	-				+0.5
4,075,961	-				-0.0
4,076,096	-				+0.1
4,076,138	+				+1.2
4,076,175	+				-1.8
4,076,218	+				+2.6
4,076,280	+				-2.0
4,076,280	+				-0.6
4,076,281	-				+0.7
4,076,372	+		LU632_RS21320	0.13	+0.4
4,076,372	+		LU632_RS21320	0.13	+2.2
4,076,373	-		LU632_RS21320	0.13	-0.4
4,076,373	-		LU632_RS21320	0.13	-0.0
4,076,373	-		LU632_RS21320	0.13	+2.0
4,076,373	-		LU632_RS21320	0.13	-1.3
4,076,373	-		LU632_RS21320	0.13	-2.4
4,076,376	+		LU632_RS21320	0.13	-0.8
4,076,376	+		LU632_RS21320	0.13	-0.1
4,076,376	+		LU632_RS21320	0.13	+1.8
4,076,377	-		LU632_RS21320	0.13	+0.3
4,076,377	-		LU632_RS21320	0.13	-0.4
4,076,377	-		LU632_RS21320	0.13	+1.6
4,076,547	-		LU632_RS21320	0.25	-0.8
4,076,547	-		LU632_RS21320	0.25	-1.9
4,076,559	+		LU632_RS21320	0.26	-0.4
4,076,559	+		LU632_RS21320	0.26	-0.4
4,076,560	-		LU632_RS21320	0.26	+0.4
4,076,571	-		LU632_RS21320	0.27	+0.6
4,076,710	-		LU632_RS21320	0.37	-1.0
4,076,852	+		LU632_RS21320	0.47	-0.8
4,076,958	+		LU632_RS21320	0.54	-1.1
4,076,958	+		LU632_RS21320	0.54	+0.6
4,076,996	+		LU632_RS21320	0.57	+0.8
4,076,996	+		LU632_RS21320	0.57	+0.0
4,076,997	-		LU632_RS21320	0.57	-1.4
4,076,997	-		LU632_RS21320	0.57	+1.2
4,076,997	-		LU632_RS21320	0.57	-0.9
4,076,997	-		LU632_RS21320	0.57	+1.6
4,077,030	+		LU632_RS21320	0.59	-0.4
4,077,056	-		LU632_RS21320	0.61	+1.1
4,077,058	+		LU632_RS21320	0.61	-0.3
4,077,058	+		LU632_RS21320	0.61	+1.3
4,077,058	+		LU632_RS21320	0.61	+1.1
4,077,058	+		LU632_RS21320	0.61	+0.8
4,077,058	+		LU632_RS21320	0.61	-0.3
4,077,059	-		LU632_RS21320	0.61	+1.5
4,077,059	-		LU632_RS21320	0.61	-1.1
4,077,061	+		LU632_RS21320	0.62	-1.0
4,077,062	-		LU632_RS21320	0.62	+2.3
4,077,064	+		LU632_RS21320	0.62	+1.5
4,077,064	+		LU632_RS21320	0.62	-0.6
4,077,065	-		LU632_RS21320	0.62	+0.5
4,077,065	-		LU632_RS21320	0.62	-1.1
4,077,065	-		LU632_RS21320	0.62	-2.0
4,077,158	+		LU632_RS21320	0.68	-0.6
4,077,158	+		LU632_RS21320	0.68	+3.5
4,077,159	-		LU632_RS21320	0.68	-1.2