Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21300

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
4,065,486	-				+0.8
4,065,502	-				-1.6
4,065,525	+				-2.8
4,065,526	-				-1.2
4,065,526	-				+2.4
4,065,526	-				-0.2
4,065,534	+				-1.4
4,065,692	+	rapZ	LU632_RS21295	0.16	+0.2
4,065,692	+	rapZ	LU632_RS21295	0.16	+1.9
4,065,693	-	rapZ	LU632_RS21295	0.16	-0.5
4,065,695	+	rapZ	LU632_RS21295	0.17	-0.2
4,065,695	+	rapZ	LU632_RS21295	0.17	-0.9
4,065,697	+	rapZ	LU632_RS21295	0.17	-0.0
4,065,697	+	rapZ	LU632_RS21295	0.17	+0.9
4,065,722	-	rapZ	LU632_RS21295	0.20	-0.0
4,065,726	-	rapZ	LU632_RS21295	0.20	-1.6
4,065,726	-	rapZ	LU632_RS21295	0.20	-0.8
4,065,726	-	rapZ	LU632_RS21295	0.20	-0.4
4,065,728	+	rapZ	LU632_RS21295	0.21	-3.0
4,065,729	-	rapZ	LU632_RS21295	0.21	+0.3
4,065,896	+	rapZ	LU632_RS21295	0.40	-0.1
4,065,956	+	rapZ	LU632_RS21295	0.47	+0.5
4,065,957	-	rapZ	LU632_RS21295	0.47	-0.3
4,066,030	+	rapZ	LU632_RS21295	0.56	-0.9
4,066,031	-	rapZ	LU632_RS21295	0.56	-2.6
4,066,235	-	rapZ	LU632_RS21295	0.80	-1.0
4,066,270	-	rapZ	LU632_RS21295	0.84	+0.6
4,066,441	-	npr	LU632_RS21300	0.14	+1.7
4,066,444	+	npr	LU632_RS21300	0.15	-2.0
4,066,445	-	npr	LU632_RS21300	0.15	+0.2
4,066,506	+	npr	LU632_RS21300	0.38	-0.9
4,066,506	+	npr	LU632_RS21300	0.38	+0.5
4,066,507	-	npr	LU632_RS21300	0.38	-1.0
4,066,509	+	npr	LU632_RS21300	0.39	-0.8
4,066,510	-	npr	LU632_RS21300	0.39	+0.9
4,066,558	-	npr	LU632_RS21300	0.57	-0.3
4,066,558	-	npr	LU632_RS21300	0.57	-0.3
4,066,558	-	npr	LU632_RS21300	0.57	-0.3
4,066,630	-	npr	LU632_RS21300	0.83	-0.8
4,066,639	-	npr	LU632_RS21300	0.86	-2.6
4,066,685	-				-1.0
4,066,713	-				+1.7
4,066,716	+				+0.1
4,066,716	+				+0.8
4,066,717	-				+1.6
4,066,721	-				+1.3
4,066,730	+				+0.4
4,066,730	+				-0.5
4,066,805	-	mtgA	LU632_RS21305	0.12	-1.1
4,066,861	-	mtgA	LU632_RS21305	0.20	+0.6
4,066,959	-	mtgA	LU632_RS21305	0.33	-0.2
4,066,974	+	mtgA	LU632_RS21305	0.35	-0.8
4,066,974	+	mtgA	LU632_RS21305	0.35	+1.5
4,066,974	+	mtgA	LU632_RS21305	0.35	+0.4
4,067,048	+	mtgA	LU632_RS21305	0.46	+0.6
4,067,130	+	mtgA	LU632_RS21305	0.57	+1.8
4,067,130	+	mtgA	LU632_RS21305	0.57	-0.4
4,067,131	-	mtgA	LU632_RS21305	0.57	+2.8
4,067,131	-	mtgA	LU632_RS21305	0.57	+0.8
4,067,131	-	mtgA	LU632_RS21305	0.57	-1.0
4,067,131	-	mtgA	LU632_RS21305	0.57	-0.2
4,067,131	-	mtgA	LU632_RS21305	0.57	-2.9
4,067,131	-	mtgA	LU632_RS21305	0.57	+0.9
4,067,151	+	mtgA	LU632_RS21305	0.60	+0.2
4,067,152	-	mtgA	LU632_RS21305	0.60	+1.9
4,067,225	+	mtgA	LU632_RS21305	0.70	-0.1
4,067,260	+	mtgA	LU632_RS21305	0.75	-0.6
4,067,261	-	mtgA	LU632_RS21305	0.75	+1.9
4,067,361	+	mtgA	LU632_RS21305	0.89	+0.9
4,067,438	+				+0.6
4,067,473	+				+0.0
4,067,574	+				+1.4
4,067,574	+				+0.6
4,067,575	-				+0.4
4,067,639	+				+0.8
4,067,640	-				-0.5
4,067,641	+				-0.2