Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20705

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,946,821	+	bacA	LU632_RS20695	0.55	+1.5
3,946,822	-	bacA	LU632_RS20695	0.56	+0.5
3,946,822	-	bacA	LU632_RS20695	0.56	+0.4
3,947,098	+	bacA	LU632_RS20695	0.89	-0.2
3,947,099	-	bacA	LU632_RS20695	0.89	-0.6
3,947,178	-				-0.0
3,947,178	-				+0.5
3,947,190	+				+0.7
3,947,190	+				-0.8
3,947,191	-				-0.1
3,947,191	-				+0.0
3,947,191	-				+0.2
3,947,747	-				-2.8
3,947,798	+				-0.3
3,947,799	-				+0.7
3,947,799	-				-0.6
3,947,799	-				-2.3
3,947,807	-				-0.0
3,947,888	-	plsY	LU632_RS20705	0.15	+0.2
3,947,888	-	plsY	LU632_RS20705	0.15	+1.2
3,947,997	-	plsY	LU632_RS20705	0.33	+0.7
3,947,997	-	plsY	LU632_RS20705	0.33	+1.5
3,948,019	-	plsY	LU632_RS20705	0.37	+2.2
3,948,084	+	plsY	LU632_RS20705	0.48	+0.5
3,948,235	+	plsY	LU632_RS20705	0.73	+0.5
3,948,236	-	plsY	LU632_RS20705	0.73	+0.8
3,948,258	+	plsY	LU632_RS20705	0.77	-2.3
3,948,259	-	plsY	LU632_RS20705	0.77	-0.5
3,948,374	-				-0.5
3,948,484	+				-2.8
3,948,538	-				-0.1
3,948,583	+				-1.1
3,948,625	+				+0.0
3,948,839	+				+1.3
3,948,840	-				-0.8
3,948,841	+				-0.4
3,948,842	-				+0.9
3,948,859	+				+0.2
3,948,859	+				-0.9
3,948,859	+				-1.0
3,948,859	+				-0.6
3,948,860	-				-1.0