Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS20565 and ftsP are separated by 379 nucleotides ftsP and LU632_RS20575 are separated by 91 nucleotides LU632_RS20575 and parC are separated by 87 nucleotides
LU632_RS20565: LU632_RS20565 - DUF1471 domain-containing protein, at 3,915,749 to 3,916,018
_RS20565
LU632_RS20570: ftsP - cell division protein FtsP, at 3,916,398 to 3,917,813
ftsP
LU632_RS20575: LU632_RS20575 - 1-acylglycerol-3-phosphate O-acyltransferase, at 3,917,905 to 3,918,642
_RS20575
LU632_RS20580: parC - DNA topoisomerase IV subunit A, at 3,918,730 to 3,921,003
parC
Position (kb) 3916
3917
3918 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3915.410 kb on + strand at 3915.527 kb on - strand at 3915.840 kb on - strand, within LU632_RS20565 at 3915.873 kb on + strand, within LU632_RS20565 at 3915.940 kb on + strand, within LU632_RS20565 at 3915.940 kb on + strand, within LU632_RS20565 at 3915.941 kb on - strand, within LU632_RS20565 at 3915.944 kb on + strand, within LU632_RS20565 at 3916.048 kb on + strand at 3916.056 kb on - strand at 3916.144 kb on + strand at 3916.252 kb on + strand at 3916.252 kb on + strand at 3916.253 kb on - strand at 3916.283 kb on + strand at 3916.283 kb on + strand at 3916.284 kb on - strand at 3916.300 kb on + strand at 3916.395 kb on + strand at 3916.469 kb on - strand at 3916.469 kb on - strand at 3916.469 kb on - strand at 3916.472 kb on + strand at 3916.473 kb on - strand at 3916.503 kb on - strand at 3916.571 kb on + strand, within ftsP at 3916.646 kb on - strand, within ftsP at 3916.663 kb on + strand, within ftsP at 3916.663 kb on + strand, within ftsP at 3916.663 kb on + strand, within ftsP at 3916.664 kb on - strand, within ftsP at 3916.664 kb on - strand, within ftsP at 3916.667 kb on + strand, within ftsP at 3916.668 kb on - strand, within ftsP at 3916.794 kb on + strand, within ftsP at 3917.032 kb on + strand, within ftsP at 3917.184 kb on - strand, within ftsP at 3917.259 kb on - strand, within ftsP at 3917.309 kb on + strand, within ftsP at 3917.313 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.542 kb on + strand, within ftsP at 3917.543 kb on - strand, within ftsP at 3917.543 kb on - strand, within ftsP at 3917.543 kb on - strand, within ftsP at 3917.552 kb on + strand, within ftsP at 3917.593 kb on + strand, within ftsP at 3917.593 kb on + strand, within ftsP at 3917.594 kb on - strand, within ftsP at 3917.713 kb on - strand at 3917.813 kb on + strand at 3917.866 kb on - strand at 3917.873 kb on + strand at 3917.873 kb on + strand at 3917.889 kb on + strand at 3917.889 kb on + strand at 3918.686 kb on + strand at 3918.687 kb on - strand at 3918.713 kb on - strand at 3918.768 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 3,915,410 + -0.5 3,915,527 - +0.8 3,915,840 - LU632_RS20565 0.34 +0.7 3,915,873 + LU632_RS20565 0.46 +0.8 3,915,940 + LU632_RS20565 0.71 -0.0 3,915,940 + LU632_RS20565 0.71 +0.6 3,915,941 - LU632_RS20565 0.71 +0.1 3,915,944 + LU632_RS20565 0.72 -2.4 3,916,048 + -0.5 3,916,056 - +0.7 3,916,144 + +0.7 3,916,252 + +0.2 3,916,252 + -0.0 3,916,253 - +0.9 3,916,283 + -0.2 3,916,283 + +1.0 3,916,284 - -0.4 3,916,300 + -1.3 3,916,395 + -0.6 3,916,469 - -1.9 3,916,469 - +0.8 3,916,469 - +1.2 3,916,472 + -0.2 3,916,473 - +1.1 3,916,503 - +1.5 3,916,571 + ftsP LU632_RS20570 0.12 -0.3 3,916,646 - ftsP LU632_RS20570 0.18 -1.3 3,916,663 + ftsP LU632_RS20570 0.19 -0.1 3,916,663 + ftsP LU632_RS20570 0.19 +1.2 3,916,663 + ftsP LU632_RS20570 0.19 -0.5 3,916,664 - ftsP LU632_RS20570 0.19 +3.1 3,916,664 - ftsP LU632_RS20570 0.19 -0.8 3,916,667 + ftsP LU632_RS20570 0.19 +0.6 3,916,668 - ftsP LU632_RS20570 0.19 +0.2 3,916,794 + ftsP LU632_RS20570 0.28 -0.3 3,917,032 + ftsP LU632_RS20570 0.45 +0.5 3,917,184 - ftsP LU632_RS20570 0.56 +0.0 3,917,259 - ftsP LU632_RS20570 0.61 -0.6 3,917,309 + ftsP LU632_RS20570 0.64 -0.5 3,917,313 + ftsP LU632_RS20570 0.65 -2.1 3,917,353 + ftsP LU632_RS20570 0.67 -1.3 3,917,353 + ftsP LU632_RS20570 0.67 -1.2 3,917,353 + ftsP LU632_RS20570 0.67 -2.4 3,917,353 + ftsP LU632_RS20570 0.67 -2.5 3,917,354 - ftsP LU632_RS20570 0.68 -0.4 3,917,354 - ftsP LU632_RS20570 0.68 +1.6 3,917,354 - ftsP LU632_RS20570 0.68 -0.7 3,917,354 - ftsP LU632_RS20570 0.68 -0.9 3,917,354 - ftsP LU632_RS20570 0.68 +0.1 3,917,354 - ftsP LU632_RS20570 0.68 -1.3 3,917,354 - ftsP LU632_RS20570 0.68 -2.0 3,917,354 - ftsP LU632_RS20570 0.68 +2.7 3,917,355 + ftsP LU632_RS20570 0.68 -0.0 3,917,355 + ftsP LU632_RS20570 0.68 +0.5 3,917,355 + ftsP LU632_RS20570 0.68 +0.2 3,917,355 + ftsP LU632_RS20570 0.68 +0.9 3,917,356 - ftsP LU632_RS20570 0.68 -0.5 3,917,356 - ftsP LU632_RS20570 0.68 -1.5 3,917,356 - ftsP LU632_RS20570 0.68 +0.1 3,917,356 - ftsP LU632_RS20570 0.68 -1.8 3,917,356 - ftsP LU632_RS20570 0.68 -0.4 3,917,356 - ftsP LU632_RS20570 0.68 -0.2 3,917,356 - ftsP LU632_RS20570 0.68 -0.2 3,917,356 - ftsP LU632_RS20570 0.68 -0.5 3,917,356 - ftsP LU632_RS20570 0.68 +2.0 3,917,357 + ftsP LU632_RS20570 0.68 -1.3 3,917,357 + ftsP LU632_RS20570 0.68 +1.1 3,917,357 + ftsP LU632_RS20570 0.68 +0.1 3,917,357 + ftsP LU632_RS20570 0.68 -0.0 3,917,358 - ftsP LU632_RS20570 0.68 -1.6 3,917,358 - ftsP LU632_RS20570 0.68 -2.3 3,917,358 - ftsP LU632_RS20570 0.68 -1.6 3,917,358 - ftsP LU632_RS20570 0.68 +0.2 3,917,358 - ftsP LU632_RS20570 0.68 -0.4 3,917,358 - ftsP LU632_RS20570 0.68 -0.8 3,917,358 - ftsP LU632_RS20570 0.68 -1.0 3,917,358 - ftsP LU632_RS20570 0.68 -0.4 3,917,358 - ftsP LU632_RS20570 0.68 -1.6 3,917,542 + ftsP LU632_RS20570 0.81 -2.0 3,917,543 - ftsP LU632_RS20570 0.81 +0.3 3,917,543 - ftsP LU632_RS20570 0.81 +0.1 3,917,543 - ftsP LU632_RS20570 0.81 -0.5 3,917,552 + ftsP LU632_RS20570 0.81 +0.4 3,917,593 + ftsP LU632_RS20570 0.84 -0.9 3,917,593 + ftsP LU632_RS20570 0.84 -2.4 3,917,594 - ftsP LU632_RS20570 0.84 -0.0 3,917,713 - -0.7 3,917,813 + -1.2 3,917,866 - +0.2 3,917,873 + +2.3 3,917,873 + +1.9 3,917,889 + -0.5 3,917,889 + -0.6 3,918,686 + -1.3 3,918,687 - -1.0 3,918,713 - +1.1 3,918,768 + +1.5
Or see this region's nucleotide sequence