Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20155

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,837,658	-				+0.8
3,837,715	+				-0.7
3,837,715	+				-1.0
3,837,716	-				-1.3
3,837,719	+				-0.8
3,837,719	+				-1.1
3,837,720	-				+3.4
3,837,790	+				+1.8
3,837,839	+				-0.5
3,837,845	-				+4.5
3,837,845	-				+1.0
3,837,934	-	speE	LU632_RS20150	0.19	-0.3
3,837,955	+	speE	LU632_RS20150	0.22	+0.9
3,838,038	+	speE	LU632_RS20150	0.31	-2.8
3,838,038	+	speE	LU632_RS20150	0.31	-1.3
3,838,038	+	speE	LU632_RS20150	0.31	-0.5
3,838,038	+	speE	LU632_RS20150	0.31	+0.1
3,838,038	+	speE	LU632_RS20150	0.31	+0.5
3,838,038	+	speE	LU632_RS20150	0.31	-1.3
3,838,038	+	speE	LU632_RS20150	0.31	-1.1
3,838,038	+	speE	LU632_RS20150	0.31	-0.0
3,838,039	-	speE	LU632_RS20150	0.31	+1.5
3,838,039	-	speE	LU632_RS20150	0.31	-0.4
3,838,039	-	speE	LU632_RS20150	0.31	-2.2
3,838,039	-	speE	LU632_RS20150	0.31	-0.4
3,838,127	-	speE	LU632_RS20150	0.42	+0.7
3,838,219	-	speE	LU632_RS20150	0.52	-0.3
3,838,403	-	speE	LU632_RS20150	0.74	-0.4
3,838,444	+	speE	LU632_RS20150	0.79	+0.5
3,838,444	+	speE	LU632_RS20150	0.79	+0.2
3,838,445	-	speE	LU632_RS20150	0.79	+2.8
3,838,445	-	speE	LU632_RS20150	0.79	-2.0
3,838,502	+	speE	LU632_RS20150	0.85	-0.5
3,838,503	-	speE	LU632_RS20150	0.86	-0.1
3,838,507	-	speE	LU632_RS20150	0.86	-0.6
3,838,556	-				-0.1
3,838,558	+				-1.0
3,838,558	+				-0.7
3,838,559	-				-2.5
3,838,559	-				-1.3
3,838,559	-				-0.5
3,838,608	-				-0.6
3,838,670	-				+1.5
3,838,713	+				+1.2
3,838,714	-				+0.0
3,838,756	-	speD	LU632_RS20155	0.13	-0.4
3,838,757	+	speD	LU632_RS20155	0.13	+1.1
3,838,764	+	speD	LU632_RS20155	0.14	-0.3
3,838,764	+	speD	LU632_RS20155	0.14	+1.5
3,838,765	-	speD	LU632_RS20155	0.14	+2.1
3,838,765	-	speD	LU632_RS20155	0.14	-1.7
3,838,779	+	speD	LU632_RS20155	0.16	-0.7
3,838,780	-	speD	LU632_RS20155	0.16	+0.9
3,838,780	-	speD	LU632_RS20155	0.16	-1.5
3,838,843	+	speD	LU632_RS20155	0.23	-0.5
3,838,844	-	speD	LU632_RS20155	0.24	-1.1
3,838,982	+	speD	LU632_RS20155	0.41	-0.2
3,838,983	-	speD	LU632_RS20155	0.41	-1.1
3,838,992	-	speD	LU632_RS20155	0.42	+0.7
3,839,063	-	speD	LU632_RS20155	0.51	-0.3
3,839,063	-	speD	LU632_RS20155	0.51	+0.1
3,839,103	+	speD	LU632_RS20155	0.56	+1.0
3,839,104	-	speD	LU632_RS20155	0.56	+3.2
3,839,129	+	speD	LU632_RS20155	0.59	+0.3
3,839,130	-	speD	LU632_RS20155	0.59	-0.0
3,839,130	-	speD	LU632_RS20155	0.59	+0.5
3,839,190	+	speD	LU632_RS20155	0.66	+0.6
3,839,190	+	speD	LU632_RS20155	0.66	+0.7
3,839,190	+	speD	LU632_RS20155	0.66	+0.5
3,839,190	+	speD	LU632_RS20155	0.66	-0.2
3,839,190	+	speD	LU632_RS20155	0.66	-0.2
3,839,191	-	speD	LU632_RS20155	0.66	+1.2
3,839,191	-	speD	LU632_RS20155	0.66	+0.5
3,839,193	-	speD	LU632_RS20155	0.67	-2.5
3,839,250	+	speD	LU632_RS20155	0.74	+0.7
3,839,251	-	speD	LU632_RS20155	0.74	-0.7
3,839,331	+	speD	LU632_RS20155	0.84	+0.0
3,839,332	-	speD	LU632_RS20155	0.84	+0.4
3,839,359	+	speD	LU632_RS20155	0.87	+0.4
3,839,359	+	speD	LU632_RS20155	0.87	+0.7
3,839,360	-	speD	LU632_RS20155	0.87	+1.5
3,839,360	-	speD	LU632_RS20155	0.87	+0.5
3,839,392	+				-0.2
3,839,392	+				+0.4
3,839,479	-		LU632_RS20160	0.11	-0.6
3,839,588	+		LU632_RS20160	0.24	-0.8
3,839,589	-		LU632_RS20160	0.25	+1.2
3,839,589	-		LU632_RS20160	0.25	-0.1
3,839,589	-		LU632_RS20160	0.25	-0.6
3,839,703	+		LU632_RS20160	0.38	+0.2
3,839,815	+		LU632_RS20160	0.52	+0.5
3,839,998	-		LU632_RS20160	0.73	+0.7
3,840,096	+		LU632_RS20160	0.85	-0.9
3,840,100	+		LU632_RS20160	0.86	-2.6
3,840,133	-		LU632_RS20160	0.90	+0.7
3,840,169	-				+3.5
3,840,323	-		LU632_RS20165	0.47	+0.5
3,840,358	-		LU632_RS20165	0.60	+1.0
3,840,400	-		LU632_RS20165	0.75	+2.4
3,840,400	-		LU632_RS20165	0.75	-0.4