Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19115

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,605,977	+		LU632_RS19110	0.84	-2.3
3,606,120	-				-0.2
3,606,123	+				-3.0
3,606,123	+				-1.1
3,606,123	+				-0.6
3,606,123	+				-1.0
3,606,123	+				-0.4
3,606,123	+				-0.5
3,606,124	-				-0.6
3,606,124	-				-0.2
3,606,139	+				+0.2
3,606,194	-				+2.1
3,606,198	-				-0.1
3,606,198	-				+0.2
3,606,226	-				+0.4
3,606,289	+				-0.3
3,606,357	+				+0.0
3,606,459	-				-0.0
3,606,500	-				-1.2
3,606,574	+				+0.0
3,606,695	+				+1.0
3,606,879	+				+2.0
3,607,030	+		LU632_RS19115	0.30	-1.4
3,607,031	-		LU632_RS19115	0.30	-2.7
3,607,064	+		LU632_RS19115	0.39	-1.5
3,607,064	+		LU632_RS19115	0.39	-0.9
3,607,065	-		LU632_RS19115	0.39	-0.6
3,607,065	-		LU632_RS19115	0.39	-1.7
3,607,065	-		LU632_RS19115	0.39	-1.9
3,607,066	+		LU632_RS19115	0.40	+0.3
3,607,066	+		LU632_RS19115	0.40	+0.8
3,607,066	+		LU632_RS19115	0.40	-0.5
3,607,067	-		LU632_RS19115	0.40	+1.1
3,607,068	+		LU632_RS19115	0.40	-0.2
3,607,069	-		LU632_RS19115	0.40	-0.4
3,607,069	-		LU632_RS19115	0.40	+0.6
3,607,118	-		LU632_RS19115	0.53	-0.6
3,607,118	-		LU632_RS19115	0.53	-0.1
3,607,118	-		LU632_RS19115	0.53	-0.5
3,607,130	+		LU632_RS19115	0.57	-0.9
3,607,131	-		LU632_RS19115	0.57	-0.3
3,607,141	-		LU632_RS19115	0.60	-2.5
3,607,147	-		LU632_RS19115	0.61	+0.1
3,607,372	+				+0.2
3,607,440	+				-0.4
3,607,572	-		LU632_RS19120	0.31	-1.6
3,607,575	-		LU632_RS19120	0.32	+1.6
3,607,659	+		LU632_RS19120	0.69	+3.2
3,607,659	+		LU632_RS19120	0.69	-0.9
3,607,659	+		LU632_RS19120	0.69	-0.4
3,607,660	-		LU632_RS19120	0.70	+0.5
3,607,695	-		LU632_RS19120	0.85	-0.2
3,607,695	-		LU632_RS19120	0.85	+0.9
3,607,710	+				-0.4
3,607,858	-				+2.4
3,607,912	+				-0.9