Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19090

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,602,053	+		LU632_RS19085	0.14	-2.2
3,602,054	-		LU632_RS19085	0.14	+1.9
3,602,094	+		LU632_RS19085	0.18	+0.2
3,602,181	-		LU632_RS19085	0.26	+0.7
3,602,197	+		LU632_RS19085	0.27	-0.3
3,602,240	+		LU632_RS19085	0.32	+0.1
3,602,488	+		LU632_RS19085	0.55	+0.4
3,602,653	+		LU632_RS19085	0.71	-1.1
3,602,653	+		LU632_RS19085	0.71	+0.1
3,602,698	-		LU632_RS19085	0.76	-1.9
3,602,740	-		LU632_RS19085	0.80	-1.6
3,602,740	-		LU632_RS19085	0.80	-0.0
3,602,845	+		LU632_RS19085	0.90	-0.3
3,602,845	+		LU632_RS19085	0.90	-1.0
3,602,886	+				+3.2
3,603,035	-				-1.9
3,603,057	+		LU632_RS19090	0.14	+0.8
3,603,080	+		LU632_RS19090	0.24	+0.4
3,603,080	+		LU632_RS19090	0.24	-0.6
3,603,081	-		LU632_RS19090	0.25	-0.2
3,603,082	+		LU632_RS19090	0.25	-1.3
3,603,082	+		LU632_RS19090	0.25	+0.8
3,603,091	-		LU632_RS19090	0.29	+1.4
3,603,144	+		LU632_RS19090	0.52	+1.4
3,603,145	-		LU632_RS19090	0.53	-0.2
3,603,292	+				-0.6
3,603,371	+				-0.7
3,603,426	-		LU632_RS19095	0.18	+0.3
3,603,544	+		LU632_RS19095	0.38	-0.4
3,603,576	-		LU632_RS19095	0.44	+0.5
3,603,906	+				-0.6
3,603,930	-				-0.5
3,603,936	+				+0.8
3,603,957	-				-0.4
3,604,000	-				+0.3