Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18720

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,535,475	-		LU632_RS18710	0.72	+0.5
3,535,475	-		LU632_RS18710	0.72	-0.7
3,535,475	-		LU632_RS18710	0.72	+0.0
3,535,475	-		LU632_RS18710	0.72	-0.2
3,535,649	+		LU632_RS18710	0.86	+2.4
3,535,661	+		LU632_RS18710	0.87	-1.2
3,535,729	-				+0.6
3,535,729	-				-0.2
3,536,604	+		LU632_RS18720	0.13	-0.2
3,536,971	-		LU632_RS18720	0.40	-0.8
3,536,979	+		LU632_RS18720	0.41	+0.5
3,537,084	-		LU632_RS18720	0.49	+0.5
3,537,386	+		LU632_RS18720	0.72	-1.0
3,537,410	+		LU632_RS18720	0.74	+1.8
3,537,411	-		LU632_RS18720	0.74	-1.3
3,537,615	+		LU632_RS18720	0.89	-0.0
3,537,625	-		LU632_RS18720	0.90	-0.8
3,537,672	+				+0.2
3,537,672	+				+0.1
3,537,673	-				-0.6
3,537,673	-				+0.2
3,537,680	+				+0.5
3,537,681	-				+0.5
3,537,790	+				-1.7
3,537,805	+				+1.9
3,537,837	+				+0.2
3,537,838	-				+0.1
3,537,959	-		LU632_RS18725	0.14	+1.3
3,538,236	+		LU632_RS18725	0.31	-0.7
3,538,236	+		LU632_RS18725	0.31	+0.9
3,538,257	+		LU632_RS18725	0.32	-1.3
3,538,257	+		LU632_RS18725	0.32	+0.4
3,538,257	+		LU632_RS18725	0.32	-1.5
3,538,257	+		LU632_RS18725	0.32	+0.5
3,538,257	+		LU632_RS18725	0.32	+0.6
3,538,257	+		LU632_RS18725	0.32	-2.6
3,538,257	+		LU632_RS18725	0.32	+2.8
3,538,257	+		LU632_RS18725	0.32	-1.8
3,538,257	+		LU632_RS18725	0.32	-0.6
3,538,421	-		LU632_RS18725	0.43	+1.3
3,538,421	-		LU632_RS18725	0.43	-0.5