Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18360

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,470,086	+				-0.2
3,470,086	+				+1.7
3,470,121	+				-0.3
3,470,122	-				-1.0
3,470,216	+	bolA	LU632_RS18360	0.26	+0.5
3,470,217	-	bolA	LU632_RS18360	0.27	-1.2
3,470,217	-	bolA	LU632_RS18360	0.27	+1.2
3,470,269	+	bolA	LU632_RS18360	0.43	-0.3
3,470,270	-	bolA	LU632_RS18360	0.43	-0.5
3,470,333	+	bolA	LU632_RS18360	0.63	-1.0
3,470,334	-	bolA	LU632_RS18360	0.64	-0.8
3,470,447	+				+1.8
3,470,454	-				+1.0
3,470,500	+				+1.3
3,470,501	-				-0.6
3,470,558	+				-0.5
3,470,593	+				+2.3
3,470,610	+				+1.5
3,470,701	+		LU632_RS18365	0.15	+1.6
3,470,731	+		LU632_RS18365	0.20	-1.0
3,470,815	-		LU632_RS18365	0.35	-0.9
3,470,891	+		LU632_RS18365	0.48	-2.0
3,470,892	-		LU632_RS18365	0.48	+1.3
3,470,945	+		LU632_RS18365	0.57	+0.7
3,470,945	+		LU632_RS18365	0.57	+1.0
3,470,946	-		LU632_RS18365	0.57	+0.7
3,470,946	-		LU632_RS18365	0.57	+0.7
3,470,946	-		LU632_RS18365	0.57	+1.0
3,470,946	-		LU632_RS18365	0.57	+0.1
3,470,980	+		LU632_RS18365	0.63	+2.3
3,470,981	-		LU632_RS18365	0.63	-0.5
3,470,981	-		LU632_RS18365	0.63	-0.7
3,470,999	-		LU632_RS18365	0.66	+1.3
3,471,032	-		LU632_RS18365	0.72	+0.2
3,471,059	+		LU632_RS18365	0.77	+0.3
3,471,060	-		LU632_RS18365	0.77	-0.7
3,471,061	+		LU632_RS18365	0.77	-0.9
3,471,067	-		LU632_RS18365	0.78	-0.3
3,471,067	-		LU632_RS18365	0.78	-0.2
3,471,067	-		LU632_RS18365	0.78	-1.9
3,471,067	-		LU632_RS18365	0.78	-0.7
3,471,264	+				-2.7
3,471,296	+				+0.1
3,471,296	+				-1.0
3,471,340	+				-0.2