Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18020

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,404,702	-				-1.0
3,404,783	+				-0.8
3,404,783	+				-0.9
3,404,784	-				-0.1
3,404,867	-				+0.6
3,405,112	-		LU632_RS18015	0.11	+1.0
3,405,112	-		LU632_RS18015	0.11	+0.5
3,405,204	+		LU632_RS18015	0.34	+0.3
3,405,205	-		LU632_RS18015	0.34	+0.8
3,405,281	+		LU632_RS18015	0.53	-0.6
3,405,452	-				+1.7
3,405,456	+				+4.2
3,405,507	-				+0.3
3,405,507	-				-0.0
3,405,537	-				+0.0
3,405,656	+				+0.7
3,405,906	-		LU632_RS18020	0.32	-0.4
3,407,048	-				+0.4
3,407,146	+				-0.7
3,407,156	-				-1.2
3,407,176	-				-0.3
3,407,183	-				-1.6
3,407,185	+				+1.0
3,407,202	+				+1.3
3,407,263	+				+0.1
3,407,299	+				-0.3
3,407,300	-				-1.9
3,407,499	+		LU632_RS18030	0.65	+0.4