Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17815

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,354,890	-	pilW	LU632_RS17810	0.27	+0.6
3,355,136	-	pilW	LU632_RS17810	0.60	-1.0
3,355,143	-	pilW	LU632_RS17810	0.61	+0.7
3,355,143	-	pilW	LU632_RS17810	0.61	-0.1
3,355,143	-	pilW	LU632_RS17810	0.61	-0.5
3,355,182	+	pilW	LU632_RS17810	0.66	+1.0
3,355,182	+	pilW	LU632_RS17810	0.66	-0.4
3,355,183	-	pilW	LU632_RS17810	0.67	-1.9
3,355,242	+	pilW	LU632_RS17810	0.75	-0.5
3,355,243	-	pilW	LU632_RS17810	0.75	-2.2
3,355,243	-	pilW	LU632_RS17810	0.75	-0.1
3,355,324	-	pilW	LU632_RS17810	0.86	+0.1
3,355,617	-				-0.4
3,355,635	-		LU632_RS17815	0.10	-1.3
3,355,643	+		LU632_RS17815	0.11	+0.1
3,355,644	-		LU632_RS17815	0.11	+0.1
3,355,647	-		LU632_RS17815	0.11	-0.1
3,355,649	+		LU632_RS17815	0.12	-0.4
3,355,831	+		LU632_RS17815	0.27	-0.0
3,355,907	+		LU632_RS17815	0.34	+0.4
3,355,925	+		LU632_RS17815	0.35	+0.0
3,355,925	+		LU632_RS17815	0.35	-1.2
3,355,926	-		LU632_RS17815	0.35	-0.8
3,355,944	+		LU632_RS17815	0.37	-0.3
3,355,944	+		LU632_RS17815	0.37	-0.2
3,355,945	-		LU632_RS17815	0.37	-0.0
3,355,945	-		LU632_RS17815	0.37	-0.4
3,355,966	-		LU632_RS17815	0.39	+0.9
3,356,118	+		LU632_RS17815	0.52	-0.7
3,356,119	-		LU632_RS17815	0.52	-2.0
3,356,344	+		LU632_RS17815	0.71	-0.6
3,356,345	-		LU632_RS17815	0.71	-1.1
3,356,345	-		LU632_RS17815	0.71	+2.1
3,356,378	+		LU632_RS17815	0.74	+0.1
3,356,379	-		LU632_RS17815	0.74	+0.6
3,356,387	+		LU632_RS17815	0.74	-0.3
3,356,387	+		LU632_RS17815	0.74	-0.7
3,356,388	-		LU632_RS17815	0.74	+0.3
3,356,477	+		LU632_RS17815	0.82	+1.2
3,356,478	-		LU632_RS17815	0.82	+0.9
3,356,518	+		LU632_RS17815	0.86	-0.4
3,356,687	+				+0.3
3,356,688	-				-1.7
3,356,709	+				-1.4
3,356,710	-				+0.4
3,356,734	+				-0.4
3,356,734	+				+1.1
3,356,735	-				-0.0
3,356,762	-				-1.5
3,356,799	+				-1.5
3,356,801	+				+0.3
3,356,801	+				+1.0
3,356,802	-				+1.1
3,356,831	-				+0.0
3,356,850	-				-1.3
3,356,850	-				+0.5
3,356,870	+				-0.6
3,356,877	-				-0.3
3,356,878	-				+0.2
3,356,928	-				+0.1
3,357,039	-	ndk	LU632_RS17820	0.26	-1.8
3,357,039	-	ndk	LU632_RS17820	0.26	-3.0
3,357,207	-	ndk	LU632_RS17820	0.65	-1.8
3,357,328	+				-1.5
3,357,342	+				-2.2
3,357,352	-				+0.4
3,357,379	+				-0.9
3,357,379	+				+0.3
3,357,380	-				+0.1
3,357,380	-				-1.5
3,357,557	-				+0.6
3,357,573	+				+0.4
3,357,574	-				-0.7