Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17770

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,343,584	+				-0.9
3,343,585	-				-1.0
3,343,670	-				-0.1
3,343,689	+				-0.6
3,343,689	+				+0.3
3,343,689	+				+0.5
3,343,690	-				-0.7
3,343,790	+				+1.2
3,343,829	+				-0.3
3,343,964	+				+1.4
3,343,967	+				-0.3
3,343,967	+				-0.3
3,344,023	+				-0.1
3,344,023	+				-0.0
3,344,061	+				-0.4
3,344,063	+				-1.4
3,344,134	-				-1.2
3,344,143	+				+0.1
3,344,144	-				+1.2
3,344,144	-				+1.6
3,344,144	-				+0.3
3,344,162	+				+0.5
3,344,273	-				-2.3
3,344,309	+				+0.8
3,344,345	+				-0.9
3,344,374	+				-0.5
3,344,374	+				-0.6
3,344,374	+				-1.3
3,344,375	-				-0.3
3,344,420	+				-1.3
3,344,421	-				+1.0
3,344,421	-				+0.3
3,344,421	-				-1.0
3,344,424	+				-0.0
3,344,425	-				-0.5
3,344,447	+				-0.0
3,344,448	-				-0.3
3,344,448	-				+1.5
3,344,448	-				-1.3
3,344,448	-				-0.4
3,344,496	+				-1.0
3,344,498	+				+0.6
3,344,525	+				-0.3
3,344,526	-				-0.2
3,344,610	-				+1.7
3,344,610	-				-0.1
3,344,612	+				+0.3
3,344,613	-				-1.7
3,344,631	+				-0.2
3,344,631	+				-1.4
3,344,631	+				-0.0
3,344,631	+				-0.3
3,344,632	-				-1.0
3,344,632	-				-0.1
3,344,758	+		LU632_RS17770	0.14	+0.0
3,344,758	+		LU632_RS17770	0.14	-1.7
3,344,759	-		LU632_RS17770	0.14	-0.2
3,344,759	-		LU632_RS17770	0.14	-1.3
3,344,996	+		LU632_RS17770	0.24	-1.1
3,345,021	+		LU632_RS17770	0.25	-0.7
3,345,022	-		LU632_RS17770	0.25	+1.0
3,345,070	-		LU632_RS17770	0.27	+2.5
3,345,124	-		LU632_RS17770	0.29	+0.3
3,345,231	-		LU632_RS17770	0.33	-0.2
3,345,231	-		LU632_RS17770	0.33	+1.1
3,345,250	-		LU632_RS17770	0.34	-3.1
3,345,310	+		LU632_RS17770	0.37	+1.1
3,345,310	+		LU632_RS17770	0.37	+0.4
3,345,314	+		LU632_RS17770	0.37	+1.3
3,345,315	-		LU632_RS17770	0.37	-1.0
3,345,315	-		LU632_RS17770	0.37	+0.2
3,345,315	-		LU632_RS17770	0.37	+0.1
3,345,495	-		LU632_RS17770	0.44	+0.2
3,345,495	-		LU632_RS17770	0.44	-0.6
3,345,499	-		LU632_RS17770	0.44	-0.8
3,345,573	+		LU632_RS17770	0.47	-1.3
3,345,584	+		LU632_RS17770	0.48	-0.5
3,345,584	+		LU632_RS17770	0.48	-1.3
3,345,584	+		LU632_RS17770	0.48	+0.3
3,345,585	-		LU632_RS17770	0.48	+2.0
3,345,591	+		LU632_RS17770	0.48	+0.3
3,345,592	-		LU632_RS17770	0.48	+1.5
3,345,621	+		LU632_RS17770	0.49	+0.1
3,345,623	+		LU632_RS17770	0.49	+0.2
3,345,623	+		LU632_RS17770	0.49	-0.2
3,345,623	+		LU632_RS17770	0.49	-0.9
3,345,624	-		LU632_RS17770	0.50	-1.0
3,345,809	-		LU632_RS17770	0.57	+0.2
3,345,813	-		LU632_RS17770	0.57	+1.0
3,345,913	+		LU632_RS17770	0.61	-1.5
3,346,016	-		LU632_RS17770	0.66	+0.7
3,346,138	-		LU632_RS17770	0.71	+1.2
3,346,138	-		LU632_RS17770	0.71	-2.6
3,346,165	-		LU632_RS17770	0.72	-1.3
3,346,219	+		LU632_RS17770	0.74	-0.8
3,346,225	+		LU632_RS17770	0.74	-0.5
3,346,225	+		LU632_RS17770	0.74	-0.5
3,346,225	+		LU632_RS17770	0.74	+0.9
3,346,226	-		LU632_RS17770	0.74	+1.3
3,346,226	-		LU632_RS17770	0.74	-1.9
3,346,227	+		LU632_RS17770	0.74	-2.2
3,346,228	-		LU632_RS17770	0.74	+1.0
3,346,228	-		LU632_RS17770	0.74	+0.9
3,346,283	-		LU632_RS17770	0.77	-2.0
3,346,320	+		LU632_RS17770	0.78	+0.4
3,346,321	-		LU632_RS17770	0.78	-0.7
3,346,328	+		LU632_RS17770	0.78	+0.7
3,346,328	+		LU632_RS17770	0.78	-1.6
3,346,494	+		LU632_RS17770	0.85	+4.3
3,346,494	+		LU632_RS17770	0.85	-0.6
3,346,495	-		LU632_RS17770	0.85	-1.2
3,346,507	-		LU632_RS17770	0.86	-0.5
3,346,690	-				-0.3
3,347,459	+				-0.4
3,347,459	+				+0.9
3,347,461	+				-0.3
3,347,461	+				+1.7
3,347,462	-				-0.6
3,347,462	-				-0.8
3,347,462	-				-1.9
3,347,539	+				+0.1
3,347,561	+				-1.5
3,347,611	-				+0.9
3,347,624	-				+1.0
3,347,633	+				+0.7