Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17760

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,340,828	-	guaB	LU632_RS17755	0.73	+1.3
3,340,856	-	guaB	LU632_RS17755	0.75	+1.3
3,341,260	+				-0.7
3,341,282	-				-0.0
3,341,349	+				+1.0
3,341,353	-				-2.5
3,341,363	+				-0.1
3,341,440	+				-0.1
3,341,537	+	xseA	LU632_RS17760	0.10	-0.2
3,341,698	+	xseA	LU632_RS17760	0.21	+1.3
3,341,698	+	xseA	LU632_RS17760	0.21	+0.1
3,341,752	+	xseA	LU632_RS17760	0.25	+1.0
3,341,909	+	xseA	LU632_RS17760	0.36	+1.1
3,341,994	+	xseA	LU632_RS17760	0.42	+2.0
3,341,994	+	xseA	LU632_RS17760	0.42	-1.3
3,341,995	-	xseA	LU632_RS17760	0.42	-0.6
3,341,995	-	xseA	LU632_RS17760	0.42	-1.5
3,341,995	-	xseA	LU632_RS17760	0.42	+0.7
3,342,068	-	xseA	LU632_RS17760	0.48	+0.1
3,342,068	-	xseA	LU632_RS17760	0.48	-1.8
3,342,092	-	xseA	LU632_RS17760	0.49	+0.7
3,342,125	-	xseA	LU632_RS17760	0.52	+0.5
3,342,254	+	xseA	LU632_RS17760	0.61	+1.2
3,342,254	+	xseA	LU632_RS17760	0.61	+4.1
3,342,255	-	xseA	LU632_RS17760	0.61	-0.3
3,342,257	+	xseA	LU632_RS17760	0.61	-0.2
3,342,258	-	xseA	LU632_RS17760	0.61	-0.7
3,342,277	+	xseA	LU632_RS17760	0.62	+0.4
3,342,397	-	xseA	LU632_RS17760	0.71	+2.3
3,342,646	+	xseA	LU632_RS17760	0.89	-0.9
3,342,721	+				+1.5
3,342,722	-				-0.7
3,342,755	+				-1.0
3,342,756	-				-1.0
3,342,756	-				-0.1
3,342,758	-				-0.3
3,342,831	+				+0.6
3,342,831	+				-2.2
3,342,831	+				+0.9
3,342,831	+				+0.5
3,342,832	-				-0.4
3,342,832	-				+1.0
3,342,833	+				-0.3
3,342,834	-				-0.0
3,342,834	-				-0.1
3,342,834	-				+1.6
3,342,834	-				-1.0
3,342,870	-				+0.3
3,342,870	-				+0.4
3,342,921	+				+0.0
3,342,977	-		LU632_RS17765	0.15	+0.0
3,343,084	+		LU632_RS17765	0.32	-0.6
3,343,084	+		LU632_RS17765	0.32	-0.6
3,343,163	+		LU632_RS17765	0.45	-0.2
3,343,164	-		LU632_RS17765	0.45	-0.3
3,343,164	-		LU632_RS17765	0.45	+0.4
3,343,169	+		LU632_RS17765	0.45	-0.3
3,343,258	+		LU632_RS17765	0.60	+2.2
3,343,411	+		LU632_RS17765	0.84	+0.4
3,343,412	-		LU632_RS17765	0.85	+0.5
3,343,584	+				-0.9
3,343,585	-				-1.0
3,343,670	-				-0.1
3,343,689	+				-0.6
3,343,689	+				+0.3
3,343,689	+				+0.5
3,343,690	-				-0.7
3,343,790	+				+1.2