Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17725

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,330,148	+	tssA	LU632_RS17720	0.36	-1.0
3,330,404	+	tssA	LU632_RS17720	0.55	+1.3
3,330,404	+	tssA	LU632_RS17720	0.55	+2.2
3,330,404	+	tssA	LU632_RS17720	0.55	-1.5
3,330,472	+	tssA	LU632_RS17720	0.59	+1.3
3,330,472	+	tssA	LU632_RS17720	0.59	-1.5
3,330,472	+	tssA	LU632_RS17720	0.59	+1.1
3,330,472	+	tssA	LU632_RS17720	0.59	-0.6
3,330,472	+	tssA	LU632_RS17720	0.59	+0.3
3,330,473	-	tssA	LU632_RS17720	0.59	+0.4
3,330,837	+	tssA	LU632_RS17720	0.85	-1.3
3,330,837	+	tssA	LU632_RS17720	0.85	+0.3
3,330,838	-	tssA	LU632_RS17720	0.85	-0.5
3,330,838	-	tssA	LU632_RS17720	0.85	+2.1
3,330,838	-	tssA	LU632_RS17720	0.85	-0.3
3,331,008	-				-2.0
3,331,048	+				+0.1
3,331,108	+				+0.1
3,331,545	-	tssM	LU632_RS17725	0.13	+0.9
3,331,586	+	tssM	LU632_RS17725	0.14	-2.3
3,331,586	+	tssM	LU632_RS17725	0.14	-3.0
3,331,587	-	tssM	LU632_RS17725	0.14	-0.4
3,331,587	-	tssM	LU632_RS17725	0.14	-0.0
3,331,588	+	tssM	LU632_RS17725	0.14	-2.7
3,331,589	-	tssM	LU632_RS17725	0.14	+0.5
3,331,621	-	tssM	LU632_RS17725	0.15	+0.6
3,331,696	-	tssM	LU632_RS17725	0.18	+1.3
3,331,707	+	tssM	LU632_RS17725	0.18	+0.1
3,331,707	+	tssM	LU632_RS17725	0.18	-0.6
3,331,707	+	tssM	LU632_RS17725	0.18	-1.7
3,331,708	-	tssM	LU632_RS17725	0.18	-0.2
3,331,708	-	tssM	LU632_RS17725	0.18	+0.3
3,331,783	+	tssM	LU632_RS17725	0.20	+0.5
3,331,860	+	tssM	LU632_RS17725	0.22	-0.1
3,331,898	-	tssM	LU632_RS17725	0.23	-1.3
3,331,898	-	tssM	LU632_RS17725	0.23	+3.5
3,331,898	-	tssM	LU632_RS17725	0.23	-0.7
3,332,207	+	tssM	LU632_RS17725	0.32	-0.4
3,332,208	-	tssM	LU632_RS17725	0.32	+2.7
3,332,483	+	tssM	LU632_RS17725	0.40	+0.7
3,332,483	+	tssM	LU632_RS17725	0.40	-0.7
3,332,484	-	tssM	LU632_RS17725	0.40	-0.4
3,332,650	+	tssM	LU632_RS17725	0.45	+0.6
3,332,699	+	tssM	LU632_RS17725	0.46	-1.0
3,332,715	-	tssM	LU632_RS17725	0.46	+0.2
3,332,776	+	tssM	LU632_RS17725	0.48	-2.3
3,332,777	-	tssM	LU632_RS17725	0.48	+1.1
3,332,777	-	tssM	LU632_RS17725	0.48	-0.7
3,332,876	+	tssM	LU632_RS17725	0.51	+0.2
3,332,876	+	tssM	LU632_RS17725	0.51	-0.2
3,332,876	+	tssM	LU632_RS17725	0.51	-1.0
3,332,951	+	tssM	LU632_RS17725	0.53	-0.7
3,332,951	+	tssM	LU632_RS17725	0.53	+1.9
3,332,966	-	tssM	LU632_RS17725	0.54	-0.4
3,332,966	-	tssM	LU632_RS17725	0.54	-1.1
3,333,217	+	tssM	LU632_RS17725	0.61	-0.6
3,333,323	+	tssM	LU632_RS17725	0.64	-0.9
3,333,383	+	tssM	LU632_RS17725	0.65	+1.3
3,333,383	+	tssM	LU632_RS17725	0.65	-0.1
3,333,490	-	tssM	LU632_RS17725	0.68	-0.3
3,333,538	-	tssM	LU632_RS17725	0.70	+0.1
3,333,610	+	tssM	LU632_RS17725	0.72	-0.3
3,333,705	+	tssM	LU632_RS17725	0.75	+0.3
3,333,803	-	tssM	LU632_RS17725	0.77	-0.8
3,333,803	-	tssM	LU632_RS17725	0.77	-0.3
3,333,822	+	tssM	LU632_RS17725	0.78	+1.5
3,334,046	-	tssM	LU632_RS17725	0.84	+0.0
3,334,215	-	tssM	LU632_RS17725	0.89	-2.3
3,334,215	-	tssM	LU632_RS17725	0.89	+0.2
3,334,267	+				+0.9
3,334,267	+				-1.2
3,334,267	+				-1.3
3,334,268	-				-0.1
3,334,290	-				-1.0
3,334,411	+				+0.4
3,334,508	+				-0.7
3,334,508	+				+0.3
3,334,508	+				+0.9
3,334,509	-				+0.6
3,334,511	-				-0.9
3,334,511	-				+1.1
3,334,517	+				-0.1
3,334,517	+				-1.1
3,334,518	-				+1.3
3,334,601	+				-1.7
3,334,631	-				-1.5
3,334,674	+				-2.5
3,334,674	+				-0.7
3,334,674	+				+1.1
3,334,674	+				-1.4
3,334,675	-				-0.4
3,334,675	-				-1.5
3,334,691	-				+1.8
3,334,866	-		LU632_RS17730	0.39	-1.1
3,334,904	+		LU632_RS17730	0.47	-1.7
3,334,981	-		LU632_RS17730	0.63	-1.7
3,334,987	+		LU632_RS17730	0.64	-0.8
3,334,987	+		LU632_RS17730	0.64	-0.2
3,335,041	+		LU632_RS17730	0.75	+1.6
3,335,079	-		LU632_RS17730	0.83	-1.0
3,335,096	+		LU632_RS17730	0.87	+0.1
3,335,096	+		LU632_RS17730	0.87	+1.2
3,335,153	-				-1.2
3,335,153	-				-1.7
3,335,155	-				-0.2
3,335,157	+				+0.3
3,335,279	-				+2.3
3,335,284	+				-0.6
3,335,431	-		LU632_RS17735	0.14	+1.3
3,335,431	-		LU632_RS17735	0.14	-0.0
3,335,447	+		LU632_RS17735	0.15	-1.2
3,335,447	+		LU632_RS17735	0.15	-1.3
3,335,447	+		LU632_RS17735	0.15	-2.3
3,335,448	-		LU632_RS17735	0.15	-0.5
3,335,448	-		LU632_RS17735	0.15	-0.3
3,335,552	-		LU632_RS17735	0.23	+0.2