Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17605

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,307,558	+		LU632_RS17600	0.61	+0.3
3,307,559	-		LU632_RS17600	0.61	+0.1
3,307,559	-		LU632_RS17600	0.61	+0.6
3,307,585	-		LU632_RS17600	0.62	-2.5
3,307,595	+		LU632_RS17600	0.63	+2.3
3,307,599	+		LU632_RS17600	0.63	+0.7
3,307,599	+		LU632_RS17600	0.63	+1.1
3,307,768	+		LU632_RS17600	0.72	-0.2
3,307,768	+		LU632_RS17600	0.72	+0.6
3,307,768	+		LU632_RS17600	0.72	-1.8
3,307,768	+		LU632_RS17600	0.72	-1.0
3,307,769	-		LU632_RS17600	0.73	+1.5
3,307,769	-		LU632_RS17600	0.73	-1.7
3,307,785	+		LU632_RS17600	0.73	-0.3
3,307,821	-		LU632_RS17600	0.75	-0.7
3,307,878	-		LU632_RS17600	0.79	-2.3
3,307,889	+		LU632_RS17600	0.79	+0.4
3,307,979	-		LU632_RS17600	0.85	+0.2
3,308,162	+				+1.7
3,308,271	+				-0.3
3,308,271	+				+2.3
3,308,272	-				-1.0
3,308,295	+				-0.1
3,308,295	+				+0.3
3,308,296	-				-0.7
3,308,296	-				+0.3
3,308,296	-				-1.7
3,308,781	+				-0.8
3,308,783	+				+0.3
3,308,783	+				-0.1
3,308,783	+				+0.4
3,308,784	-				+0.7
3,308,912	-				+0.2
3,309,043	-	yejK	LU632_RS17610	0.16	-2.3
3,309,060	+	yejK	LU632_RS17610	0.17	+0.3
3,309,061	-	yejK	LU632_RS17610	0.17	+0.6
3,309,206	+	yejK	LU632_RS17610	0.32	-1.8
3,309,206	+	yejK	LU632_RS17610	0.32	-0.9
3,309,207	-	yejK	LU632_RS17610	0.32	+1.2
3,309,212	+	yejK	LU632_RS17610	0.32	+1.9
3,309,213	-	yejK	LU632_RS17610	0.32	+0.0
3,309,213	-	yejK	LU632_RS17610	0.32	-0.1
3,309,473	+	yejK	LU632_RS17610	0.58	-1.0
3,309,509	+	yejK	LU632_RS17610	0.62	+1.0
3,309,509	+	yejK	LU632_RS17610	0.62	+1.3
3,309,509	+	yejK	LU632_RS17610	0.62	-1.3
3,309,509	+	yejK	LU632_RS17610	0.62	-2.4
3,309,509	+	yejK	LU632_RS17610	0.62	+0.2
3,309,510	+	yejK	LU632_RS17610	0.62	-0.1
3,309,510	-	yejK	LU632_RS17610	0.62	-1.0
3,309,510	-	yejK	LU632_RS17610	0.62	+1.3
3,309,510	-	yejK	LU632_RS17610	0.62	+0.2