Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17125

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS17110 and LU632_RS17115 are separated by 114 nucleotidesLU632_RS17115 and LU632_RS17120 are separated by 1 nucleotidesLU632_RS17120 and LU632_RS17125 are separated by 12 nucleotidesLU632_RS17125 and LU632_RS17130 overlap by 4 nucleotidesLU632_RS17130 and LU632_RS17135 are separated by 4 nucleotidesLU632_RS17135 and LU632_RS17140 overlap by 4 nucleotides LU632_RS17110: LU632_RS17110 - hypothetical protein, at 3,221,697 to 3,223,598 _RS17110 LU632_RS17115: LU632_RS17115 - phage tail assembly protein, at 3,223,713 to 3,224,018 _RS17115 LU632_RS17120: LU632_RS17120 - phage tail tube protein, at 3,224,020 to 3,224,379 _RS17120 LU632_RS17125: LU632_RS17125 - phage tail sheath subtilisin-like domain-containing protein, at 3,224,392 to 3,225,921 _RS17125 LU632_RS17130: LU632_RS17130 - DUF2635 domain-containing protein, at 3,225,918 to 3,226,082 _RS17130 LU632_RS17135: LU632_RS17135 - ATP-binding protein, at 3,226,087 to 3,226,629 _RS17135 LU632_RS17140: LU632_RS17140 - hypothetical protein, at 3,226,626 to 3,226,964 _RS17140 Position (kb) 3224 3225 3226Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3223.395 kb on - strand, within LU632_RS17110at 3223.395 kb on - strand, within LU632_RS17110at 3223.433 kb on + strandat 3223.636 kb on - strandat 3223.637 kb on + strandat 3223.700 kb on + strandat 3223.844 kb on + strand, within LU632_RS17115at 3223.931 kb on + strand, within LU632_RS17115at 3224.021 kb on + strandat 3224.021 kb on + strandat 3224.021 kb on + strandat 3224.190 kb on + strand, within LU632_RS17120at 3224.234 kb on + strand, within LU632_RS17120at 3224.235 kb on - strand, within LU632_RS17120at 3224.325 kb on + strand, within LU632_RS17120at 3224.325 kb on + strand, within LU632_RS17120at 3224.325 kb on + strand, within LU632_RS17120at 3224.326 kb on - strand, within LU632_RS17120at 3224.379 kb on + strandat 3224.380 kb on - strandat 3224.615 kb on - strand, within LU632_RS17125at 3224.711 kb on + strand, within LU632_RS17125at 3224.711 kb on + strand, within LU632_RS17125at 3224.744 kb on + strand, within LU632_RS17125at 3224.744 kb on + strand, within LU632_RS17125at 3224.744 kb on + strand, within LU632_RS17125at 3224.744 kb on + strand, within LU632_RS17125at 3224.765 kb on + strand, within LU632_RS17125at 3224.780 kb on + strand, within LU632_RS17125at 3224.915 kb on - strand, within LU632_RS17125at 3225.017 kb on + strand, within LU632_RS17125at 3225.017 kb on + strand, within LU632_RS17125at 3225.018 kb on - strand, within LU632_RS17125at 3225.018 kb on - strand, within LU632_RS17125at 3225.018 kb on - strand, within LU632_RS17125at 3225.080 kb on + strand, within LU632_RS17125at 3225.080 kb on + strand, within LU632_RS17125at 3225.080 kb on + strand, within LU632_RS17125at 3225.081 kb on - strand, within LU632_RS17125at 3225.081 kb on - strand, within LU632_RS17125at 3225.095 kb on + strand, within LU632_RS17125at 3225.099 kb on + strand, within LU632_RS17125at 3225.100 kb on - strand, within LU632_RS17125at 3225.103 kb on + strand, within LU632_RS17125at 3225.104 kb on - strand, within LU632_RS17125at 3225.104 kb on - strand, within LU632_RS17125at 3225.397 kb on + strand, within LU632_RS17125at 3225.397 kb on + strand, within LU632_RS17125at 3225.397 kb on + strand, within LU632_RS17125at 3225.398 kb on - strand, within LU632_RS17125at 3225.398 kb on - strand, within LU632_RS17125at 3225.398 kb on - strand, within LU632_RS17125at 3225.398 kb on - strand, within LU632_RS17125at 3225.399 kb on + strand, within LU632_RS17125at 3225.399 kb on + strand, within LU632_RS17125at 3225.399 kb on + strand, within LU632_RS17125at 3225.399 kb on + strand, within LU632_RS17125at 3225.399 kb on + strand, within LU632_RS17125at 3225.400 kb on - strand, within LU632_RS17125at 3225.400 kb on - strand, within LU632_RS17125at 3225.400 kb on - strand, within LU632_RS17125at 3225.400 kb on - strand, within LU632_RS17125at 3225.402 kb on + strand, within LU632_RS17125at 3225.403 kb on - strand, within LU632_RS17125at 3225.403 kb on - strand, within LU632_RS17125at 3225.403 kb on - strand, within LU632_RS17125at 3225.403 kb on - strand, within LU632_RS17125at 3225.403 kb on - strand, within LU632_RS17125at 3225.403 kb on - strand, within LU632_RS17125at 3225.403 kb on - strand, within LU632_RS17125at 3225.493 kb on - strand, within LU632_RS17125at 3225.534 kb on + strand, within LU632_RS17125at 3225.536 kb on + strand, within LU632_RS17125at 3225.536 kb on + strand, within LU632_RS17125at 3225.536 kb on + strand, within LU632_RS17125at 3225.537 kb on - strand, within LU632_RS17125at 3225.547 kb on + strand, within LU632_RS17125at 3225.582 kb on + strand, within LU632_RS17125at 3225.603 kb on + strand, within LU632_RS17125at 3225.659 kb on + strand, within LU632_RS17125at 3225.659 kb on + strand, within LU632_RS17125at 3225.724 kb on - strand, within LU632_RS17125at 3225.769 kb on + strandat 3225.808 kb on + strandat 3225.808 kb on + strandat 3225.808 kb on + strandat 3225.809 kb on - strandat 3225.819 kb on + strandat 3225.820 kb on - strandat 3225.900 kb on + strandat 3225.926 kb on + strandat 3225.989 kb on + strand, within LU632_RS17130at 3226.095 kb on + strandat 3226.108 kb on + strandat 3226.150 kb on - strand, within LU632_RS17135at 3226.227 kb on - strand, within LU632_RS17135at 3226.227 kb on - strand, within LU632_RS17135at 3226.230 kb on + strand, within LU632_RS17135at 3226.230 kb on + strand, within LU632_RS17135at 3226.231 kb on - strand, within LU632_RS17135at 3226.231 kb on - strand, within LU632_RS17135at 3226.231 kb on - strand, within LU632_RS17135at 3226.231 kb on - strand, within LU632_RS17135at 3226.303 kb on - strand, within LU632_RS17135at 3226.319 kb on + strand, within LU632_RS17135at 3226.320 kb on - strand, within LU632_RS17135at 3226.320 kb on - strand, within LU632_RS17135at 3226.355 kb on - strand, within LU632_RS17135at 3226.556 kb on + strand, within LU632_RS17135at 3226.556 kb on + strand, within LU632_RS17135at 3226.557 kb on - strand, within LU632_RS17135at 3226.700 kb on - strand, within LU632_RS17140at 3226.700 kb on - strand, within LU632_RS17140at 3226.700 kb on - strand, within LU632_RS17140at 3226.700 kb on - strand, within LU632_RS17140at 3226.839 kb on - strand, within LU632_RS17140at 3226.863 kb on - strand, within LU632_RS17140

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA
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3,223,395 - LU632_RS17110 0.89 -2.0
3,223,395 - LU632_RS17110 0.89 -1.7
3,223,433 + +0.3
3,223,636 - -0.4
3,223,637 + -3.0
3,223,700 + +0.6
3,223,844 + LU632_RS17115 0.43 -0.1
3,223,931 + LU632_RS17115 0.71 -1.4
3,224,021 + -1.1
3,224,021 + -0.8
3,224,021 + -0.9
3,224,190 + LU632_RS17120 0.47 +0.7
3,224,234 + LU632_RS17120 0.59 -0.3
3,224,235 - LU632_RS17120 0.60 -0.5
3,224,325 + LU632_RS17120 0.85 -0.9
3,224,325 + LU632_RS17120 0.85 -1.2
3,224,325 + LU632_RS17120 0.85 +1.3
3,224,326 - LU632_RS17120 0.85 -0.1
3,224,379 + +0.7
3,224,380 - -0.5
3,224,615 - LU632_RS17125 0.15 -0.7
3,224,711 + LU632_RS17125 0.21 +0.9
3,224,711 + LU632_RS17125 0.21 -0.4
3,224,744 + LU632_RS17125 0.23 -0.4
3,224,744 + LU632_RS17125 0.23 -0.4
3,224,744 + LU632_RS17125 0.23 -0.1
3,224,744 + LU632_RS17125 0.23 +0.9
3,224,765 + LU632_RS17125 0.24 +1.5
3,224,780 + LU632_RS17125 0.25 -0.5
3,224,915 - LU632_RS17125 0.34 +0.3
3,225,017 + LU632_RS17125 0.41 -1.8
3,225,017 + LU632_RS17125 0.41 +1.5
3,225,018 - LU632_RS17125 0.41 +1.8
3,225,018 - LU632_RS17125 0.41 -0.9
3,225,018 - LU632_RS17125 0.41 +1.9
3,225,080 + LU632_RS17125 0.45 +0.6
3,225,080 + LU632_RS17125 0.45 +1.4
3,225,080 + LU632_RS17125 0.45 -0.1
3,225,081 - LU632_RS17125 0.45 +0.4
3,225,081 - LU632_RS17125 0.45 -1.4
3,225,095 + LU632_RS17125 0.46 -0.5
3,225,099 + LU632_RS17125 0.46 +1.7
3,225,100 - LU632_RS17125 0.46 +0.6
3,225,103 + LU632_RS17125 0.46 -1.7
3,225,104 - LU632_RS17125 0.47 -0.4
3,225,104 - LU632_RS17125 0.47 -1.5
3,225,397 + LU632_RS17125 0.66 +0.3
3,225,397 + LU632_RS17125 0.66 -0.5
3,225,397 + LU632_RS17125 0.66 -0.8
3,225,398 - LU632_RS17125 0.66 +1.6
3,225,398 - LU632_RS17125 0.66 -0.8
3,225,398 - LU632_RS17125 0.66 +0.2
3,225,398 - LU632_RS17125 0.66 +1.3
3,225,399 + LU632_RS17125 0.66 -2.1
3,225,399 + LU632_RS17125 0.66 -0.8
3,225,399 + LU632_RS17125 0.66 -1.0
3,225,399 + LU632_RS17125 0.66 +0.9
3,225,399 + LU632_RS17125 0.66 +2.2
3,225,400 - LU632_RS17125 0.66 +0.4
3,225,400 - LU632_RS17125 0.66 +0.6
3,225,400 - LU632_RS17125 0.66 -0.1
3,225,400 - LU632_RS17125 0.66 +0.7
3,225,402 + LU632_RS17125 0.66 -0.3
3,225,403 - LU632_RS17125 0.66 +0.3
3,225,403 - LU632_RS17125 0.66 +0.1
3,225,403 - LU632_RS17125 0.66 +0.7
3,225,403 - LU632_RS17125 0.66 +0.1
3,225,403 - LU632_RS17125 0.66 +0.6
3,225,403 - LU632_RS17125 0.66 -0.0
3,225,403 - LU632_RS17125 0.66 -0.6
3,225,493 - LU632_RS17125 0.72 -0.4
3,225,534 + LU632_RS17125 0.75 -0.6
3,225,536 + LU632_RS17125 0.75 -0.5
3,225,536 + LU632_RS17125 0.75 +2.1
3,225,536 + LU632_RS17125 0.75 +0.2
3,225,537 - LU632_RS17125 0.75 -0.7
3,225,547 + LU632_RS17125 0.75 +0.0
3,225,582 + LU632_RS17125 0.78 -0.4
3,225,603 + LU632_RS17125 0.79 -0.2
3,225,659 + LU632_RS17125 0.83 -0.3
3,225,659 + LU632_RS17125 0.83 -0.2
3,225,724 - LU632_RS17125 0.87 +0.6
3,225,769 + -0.4
3,225,808 + +0.0
3,225,808 + -0.7
3,225,808 + -1.4
3,225,809 - -1.4
3,225,819 + +1.1
3,225,820 - +0.6
3,225,900 + -1.0
3,225,926 + +0.2
3,225,989 + LU632_RS17130 0.43 +1.2
3,226,095 + -1.6
3,226,108 + -0.4
3,226,150 - LU632_RS17135 0.12 -0.6
3,226,227 - LU632_RS17135 0.26 +0.0
3,226,227 - LU632_RS17135 0.26 -1.0
3,226,230 + LU632_RS17135 0.26 -0.0
3,226,230 + LU632_RS17135 0.26 +0.0
3,226,231 - LU632_RS17135 0.27 -1.6
3,226,231 - LU632_RS17135 0.27 -1.1
3,226,231 - LU632_RS17135 0.27 -1.2
3,226,231 - LU632_RS17135 0.27 -0.5
3,226,303 - LU632_RS17135 0.40 +0.3
3,226,319 + LU632_RS17135 0.43 -2.3
3,226,320 - LU632_RS17135 0.43 +0.0
3,226,320 - LU632_RS17135 0.43 -2.3
3,226,355 - LU632_RS17135 0.49 +1.1
3,226,556 + LU632_RS17135 0.86 +1.0
3,226,556 + LU632_RS17135 0.86 +3.0
3,226,557 - LU632_RS17135 0.87 +1.0
3,226,700 - LU632_RS17140 0.22 +1.7
3,226,700 - LU632_RS17140 0.22 -1.0
3,226,700 - LU632_RS17140 0.22 -1.3
3,226,700 - LU632_RS17140 0.22 -1.0
3,226,839 - LU632_RS17140 0.63 -0.0
3,226,863 - LU632_RS17140 0.70 -0.7

Or see this region's nucleotide sequence