Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16420

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
3,108,168	+	tatE	LU632_RS16415	0.75	-0.9
3,108,299	-				-2.5
3,108,321	+				-1.0
3,108,322	-				+0.3
3,108,322	-				-1.4
3,108,324	+				-0.8
3,108,492	+				+2.3
3,108,517	+				-0.7
3,108,517	+				+1.3
3,108,518	-				-0.4
3,108,518	-				+0.3
3,108,522	-				-0.8
3,108,522	-				+1.3
3,108,554	-				-0.2
3,108,658	-		LU632_RS16420	0.12	+1.0
3,108,751	+		LU632_RS16420	0.23	+1.2
3,108,752	-		LU632_RS16420	0.23	+2.2
3,108,754	+		LU632_RS16420	0.23	-1.0
3,108,754	+		LU632_RS16420	0.23	-1.1
3,108,760	+		LU632_RS16420	0.24	+1.3
3,108,796	-		LU632_RS16420	0.28	-0.4
3,109,030	+		LU632_RS16420	0.57	-0.3
3,109,033	+		LU632_RS16420	0.57	+0.9
3,109,033	+		LU632_RS16420	0.57	-0.1
3,109,033	+		LU632_RS16420	0.57	+1.2
3,109,044	+		LU632_RS16420	0.59	-0.4
3,109,052	+		LU632_RS16420	0.59	+2.1
3,109,052	+		LU632_RS16420	0.59	+0.3
3,109,052	+		LU632_RS16420	0.59	+1.9
3,109,053	-		LU632_RS16420	0.60	+1.1
3,109,135	-		LU632_RS16420	0.70	+3.3
3,109,135	-		LU632_RS16420	0.70	-0.2
3,109,243	+		LU632_RS16420	0.83	+1.4
3,109,271	+		LU632_RS16420	0.86	-0.7
3,109,272	-		LU632_RS16420	0.86	+0.0
3,109,275	-		LU632_RS16420	0.87	+1.1
3,109,277	+		LU632_RS16420	0.87	+0.4
3,109,278	-		LU632_RS16420	0.87	-2.1
3,109,280	+		LU632_RS16420	0.87	+0.4
3,109,398	-				-1.2
3,109,481	+				+0.1
3,109,490	+				-1.7
3,109,491	-				+0.4
3,109,502	+				-1.0
3,109,502	+				-1.8
3,109,561	-				+1.3
3,109,568	+				-1.5
3,109,569	-				+0.2
3,109,586	+		LU632_RS16425	0.10	+0.3
3,109,609	-		LU632_RS16425	0.15	+1.1
3,109,685	+		LU632_RS16425	0.33	+0.6
3,109,691	-		LU632_RS16425	0.34	-1.4
3,109,743	-		LU632_RS16425	0.47	+2.7
3,109,774	+		LU632_RS16425	0.54	+1.3
3,109,786	-		LU632_RS16425	0.57	-0.6
3,109,937	+				-0.7
3,109,938	-				+0.2
3,110,022	+				-0.8
3,110,023	-				+1.1
3,110,039	-				-0.0
3,110,101	-				+0.2