Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15455

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,927,528	+		LU632_RS15450	0.75	+0.3
2,927,528	+		LU632_RS15450	0.75	-0.6
2,927,529	-		LU632_RS15450	0.75	+0.1
2,927,529	-		LU632_RS15450	0.75	-2.8
2,927,529	-		LU632_RS15450	0.75	-1.3
2,927,543	-		LU632_RS15450	0.77	+0.0
2,927,543	-		LU632_RS15450	0.77	-0.5
2,927,577	-		LU632_RS15450	0.80	-0.6
2,927,808	+				-0.8
2,927,809	-				+1.1
2,927,818	+				-0.3
2,927,834	-				-0.6
2,928,028	+				+1.3
2,928,123	+				-0.5
2,928,153	+				+1.3
2,928,153	+				+1.9
2,928,162	-				+2.9
2,928,162	-				+0.1
2,928,213	+				-1.9
2,928,235	-				-0.5
2,928,235	-				+0.8
2,928,318	+				-0.6
2,928,318	+				-0.3
2,928,319	-				+0.3
2,928,347	+				-0.3
2,928,348	-				+1.3
2,928,369	+				-0.6
2,928,369	-				+0.6
2,928,369	-				+0.1
2,928,369	-				+2.3
2,928,434	+				-0.2
2,928,435	-				+0.2
2,928,476	+				+0.4
2,928,602	+		LU632_RS15455	0.48	+0.2
2,928,603	-		LU632_RS15455	0.48	-0.3
2,928,874	-				+0.8
2,929,072	-				+0.4
2,929,073	+				+0.1
2,929,073	+				-1.7
2,929,267	+				-0.8
2,929,339	+				+0.8
2,929,339	+				+0.7
2,929,446	-		LU632_RS15460	0.10	+0.3
2,929,576	+		LU632_RS15460	0.14	-1.5
2,929,584	-		LU632_RS15460	0.15	+0.1
2,929,618	-		LU632_RS15460	0.16	-0.2