Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15305

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,898,476	+	copA	LU632_RS15300	0.65	+1.4
2,898,477	-	copA	LU632_RS15300	0.65	-0.5
2,898,550	+	copA	LU632_RS15300	0.68	+0.9
2,898,551	-	copA	LU632_RS15300	0.68	-0.3
2,898,630	-	copA	LU632_RS15300	0.71	+0.3
2,898,662	+	copA	LU632_RS15300	0.72	-1.0
2,898,662	+	copA	LU632_RS15300	0.72	-0.9
2,898,662	+	copA	LU632_RS15300	0.72	-0.1
2,898,663	-	copA	LU632_RS15300	0.72	+1.7
2,898,663	-	copA	LU632_RS15300	0.72	+0.3
2,898,683	+	copA	LU632_RS15300	0.73	-0.2
2,898,683	+	copA	LU632_RS15300	0.73	-0.8
2,898,683	+	copA	LU632_RS15300	0.73	+0.5
2,898,684	-	copA	LU632_RS15300	0.73	-0.9
2,898,684	-	copA	LU632_RS15300	0.73	-0.3
2,898,692	+	copA	LU632_RS15300	0.73	-0.3
2,898,713	-	copA	LU632_RS15300	0.74	+0.3
2,898,734	+	copA	LU632_RS15300	0.75	-1.6
2,898,815	-	copA	LU632_RS15300	0.78	-1.2
2,898,815	-	copA	LU632_RS15300	0.78	+0.5
2,898,872	+	copA	LU632_RS15300	0.81	+1.3
2,898,873	-	copA	LU632_RS15300	0.81	-2.9
2,898,948	-	copA	LU632_RS15300	0.84	-2.4
2,899,011	-	copA	LU632_RS15300	0.86	-2.7
2,899,045	+	copA	LU632_RS15300	0.88	+0.5
2,899,045	+	copA	LU632_RS15300	0.88	+1.1
2,899,045	+	copA	LU632_RS15300	0.88	+0.4
2,899,045	+	copA	LU632_RS15300	0.88	+0.7
2,899,046	-	copA	LU632_RS15300	0.88	+0.8
2,899,049	+	copA	LU632_RS15300	0.88	-2.7
2,899,049	+	copA	LU632_RS15300	0.88	-0.7
2,899,049	+	copA	LU632_RS15300	0.88	+0.2
2,899,050	-	copA	LU632_RS15300	0.88	+2.0
2,899,197	+				+0.5
2,899,255	+				+0.2
2,899,255	+				-0.3
2,899,356	+				-0.6
2,899,357	-				-0.7
2,899,389	-				+0.3
2,899,404	+				-0.9
2,899,405	-				+1.3
2,899,415	-				+0.3
2,899,426	+				-0.8
2,899,427	-				+0.8
2,899,618	+		LU632_RS15305	0.24	-1.8
2,899,619	-		LU632_RS15305	0.24	+0.5
2,899,619	-		LU632_RS15305	0.24	-0.3
2,899,761	+		LU632_RS15305	0.42	-0.0
2,899,761	+		LU632_RS15305	0.42	+2.9
2,899,762	-		LU632_RS15305	0.42	-0.4
2,899,762	-		LU632_RS15305	0.42	+1.6
2,899,762	-		LU632_RS15305	0.42	-0.2
2,899,850	+		LU632_RS15305	0.53	+0.6
2,899,987	+		LU632_RS15305	0.70	+0.4
2,900,011	+		LU632_RS15305	0.73	-0.2
2,900,011	+		LU632_RS15305	0.73	+0.8
2,900,012	-		LU632_RS15305	0.73	-0.2
2,900,056	+		LU632_RS15305	0.79	+0.7
2,900,057	-		LU632_RS15305	0.79	-0.9
2,900,075	-		LU632_RS15305	0.81	-0.9
2,900,077	+		LU632_RS15305	0.81	+0.0
2,900,077	+		LU632_RS15305	0.81	-1.0
2,900,094	+		LU632_RS15305	0.83	-0.3
2,900,094	+		LU632_RS15305	0.83	+0.2
2,900,095	-		LU632_RS15305	0.83	+0.0
2,900,095	-		LU632_RS15305	0.83	+0.3
2,900,156	+				+0.1
2,900,156	+				+0.5
2,900,156	+				-1.0
2,900,156	+				+0.3
2,900,156	+				+0.0
2,900,156	+				+0.7
2,900,156	+				-0.3
2,900,157	-				+0.1
2,900,157	-				+0.8
2,900,157	-				+2.6
2,900,157	-				-0.8
2,900,157	-				+0.4
2,900,157	-				+0.5
2,900,157	-				+1.0
2,900,197	+				+0.4
2,900,245	+				+0.3
2,900,246	-				+1.1
2,900,246	-				-0.2
2,900,437	+				-0.2
2,900,438	-				-0.9
2,900,440	+				-0.5
2,900,441	-				+1.0
2,900,441	-				+0.6
2,900,441	-				+0.5
2,900,452	+				+0.8
2,900,561	+				+0.1
2,900,572	+				-1.7
2,900,585	-				-0.3
2,900,621	-				+0.6
2,900,670	-				-0.1
2,900,697	-				-1.1
2,900,699	+				+0.5
2,900,779	+				-1.4
2,900,906	-				-0.8
2,900,943	+	ybaK	LU632_RS15310	0.11	+1.3
2,900,943	+	ybaK	LU632_RS15310	0.11	-0.5
2,900,944	-	ybaK	LU632_RS15310	0.11	-0.1
2,900,945	+	ybaK	LU632_RS15310	0.11	+0.5
2,900,945	+	ybaK	LU632_RS15310	0.11	+0.4
2,900,945	+	ybaK	LU632_RS15310	0.11	+0.5
2,900,945	+	ybaK	LU632_RS15310	0.11	-0.7
2,900,946	-	ybaK	LU632_RS15310	0.11	-2.0
2,900,946	-	ybaK	LU632_RS15310	0.11	-1.0
2,900,946	-	ybaK	LU632_RS15310	0.11	-0.3
2,900,946	-	ybaK	LU632_RS15310	0.11	-1.3
2,900,949	+	ybaK	LU632_RS15310	0.12	-0.3
2,900,950	-	ybaK	LU632_RS15310	0.12	+0.4
2,900,950	-	ybaK	LU632_RS15310	0.12	-0.6
2,901,024	+	ybaK	LU632_RS15310	0.28	-0.4
2,901,024	+	ybaK	LU632_RS15310	0.28	-0.9
2,901,026	+	ybaK	LU632_RS15310	0.28	+2.1
2,901,038	-	ybaK	LU632_RS15310	0.30	+2.0
2,901,101	-	ybaK	LU632_RS15310	0.44	+0.7
2,901,108	-	ybaK	LU632_RS15310	0.45	+1.3
2,901,199	+	ybaK	LU632_RS15310	0.64	-0.3