Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15050

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,855,390	+				+0.5
2,855,391	-				-1.1
2,855,391	-				-1.1
2,855,391	-				-0.5
2,855,391	-				+0.9
2,855,391	-				+0.2
2,855,434	+				-0.0
2,855,435	-				-0.7
2,855,438	+				-0.2
2,855,439	-				-0.5
2,855,460	+		LU632_RS15040	0.13	+0.8
2,855,473	+		LU632_RS15040	0.16	-0.8
2,855,473	+		LU632_RS15040	0.16	-1.1
2,855,473	+		LU632_RS15040	0.16	-0.3
2,855,474	-		LU632_RS15040	0.17	+1.7
2,855,474	-		LU632_RS15040	0.17	-0.3
2,855,517	-		LU632_RS15040	0.28	-1.6
2,855,576	-		LU632_RS15040	0.43	+0.5
2,855,576	-		LU632_RS15040	0.43	-0.9
2,855,613	-		LU632_RS15040	0.52	+2.2
2,855,642	+		LU632_RS15040	0.60	-0.6
2,855,842	+				-1.4
2,855,875	-				+0.1
2,855,908	+				+1.7
2,855,908	+				-0.3
2,856,076	+		LU632_RS15045	0.47	+1.2
2,856,077	-		LU632_RS15045	0.47	+1.2
2,856,089	+		LU632_RS15045	0.50	+0.2
2,856,090	-		LU632_RS15045	0.51	-2.2
2,856,111	+		LU632_RS15045	0.56	+0.5
2,856,187	-		LU632_RS15045	0.75	+0.1
2,856,568	+		LU632_RS15050	0.79	+0.2
2,856,569	-		LU632_RS15050	0.79	+0.5
2,856,582	-		LU632_RS15050	0.83	-0.3
2,856,595	+		LU632_RS15050	0.86	+1.1
2,856,652	+				-2.3
2,856,652	+				-0.9
2,856,652	+				+1.7
2,856,653	-				-1.1
2,856,653	-				-0.6
2,856,653	-				-0.3
2,856,654	+				-1.6
2,856,654	+				+0.0
2,856,655	-				-0.2
2,856,752	+		LU632_RS15055	0.38	+1.2
2,856,769	+		LU632_RS15055	0.44	-0.5
2,856,770	-		LU632_RS15055	0.44	-0.1
2,856,770	-		LU632_RS15055	0.44	+0.2
2,856,770	-		LU632_RS15055	0.44	-0.3
2,856,782	-		LU632_RS15055	0.48	-1.1
2,856,805	+		LU632_RS15055	0.56	-0.3
2,856,890	+		LU632_RS15055	0.85	+0.2
2,856,890	+		LU632_RS15055	0.85	+0.2
2,856,890	+		LU632_RS15055	0.85	-0.5
2,856,891	-		LU632_RS15055	0.85	-0.2
2,856,891	-		LU632_RS15055	0.85	+1.8
2,856,891	-		LU632_RS15055	0.85	+0.9
2,856,892	+		LU632_RS15055	0.85	+1.5
2,856,923	+				+0.4
2,856,923	+				-0.8
2,856,947	-				+1.2
2,856,960	-				+2.4
2,856,960	-				-2.5
2,856,960	-				+0.6
2,856,960	-				-0.1
2,857,106	-				-0.3
2,857,106	-				-2.6
2,857,141	+				-1.4
2,857,143	+				-0.0
2,857,158	-				-1.0
2,857,224	+				-1.3
2,857,225	-				+0.3
2,857,304	+				+6.5
2,857,304	+				-2.1
2,857,354	+				+3.0
2,857,355	-				-2.7
2,857,361	-				-0.2
2,857,371	-				+0.2