Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14540

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,764,131	+				-1.8
2,764,131	+				+1.1
2,764,132	-				-0.6
2,764,145	+		LU632_RS14530	0.11	+1.6
2,764,227	+		LU632_RS14530	0.23	+0.2
2,764,228	-		LU632_RS14530	0.23	-0.2
2,764,228	-		LU632_RS14530	0.23	+1.2
2,764,274	+		LU632_RS14530	0.30	-1.4
2,764,275	-		LU632_RS14530	0.30	-1.2
2,764,275	-		LU632_RS14530	0.30	+0.7
2,764,299	+		LU632_RS14530	0.34	-0.4
2,764,314	+		LU632_RS14530	0.36	-1.6
2,764,315	-		LU632_RS14530	0.36	+0.7
2,764,316	+		LU632_RS14530	0.36	+0.2
2,764,316	+		LU632_RS14530	0.36	+0.2
2,764,316	+		LU632_RS14530	0.36	+1.1
2,764,317	-		LU632_RS14530	0.36	+0.5
2,764,317	-		LU632_RS14530	0.36	+1.1
2,764,471	-		LU632_RS14530	0.59	+1.3
2,764,471	-		LU632_RS14530	0.59	-0.8
2,764,484	-		LU632_RS14530	0.61	+1.2
2,764,486	+		LU632_RS14530	0.61	+0.7
2,764,486	+		LU632_RS14530	0.61	-0.5
2,764,486	+		LU632_RS14530	0.61	+0.6
2,764,490	+		LU632_RS14530	0.61	-0.7
2,764,490	+		LU632_RS14530	0.61	+2.5
2,764,491	-		LU632_RS14530	0.62	+0.4
2,764,492	+		LU632_RS14530	0.62	+0.9
2,764,493	-		LU632_RS14530	0.62	+1.1
2,764,493	-		LU632_RS14530	0.62	+0.3
2,764,493	-		LU632_RS14530	0.62	-0.5
2,764,493	-		LU632_RS14530	0.62	+0.2
2,764,493	-		LU632_RS14530	0.62	-0.4
2,764,493	-		LU632_RS14530	0.62	+3.2
2,764,493	-		LU632_RS14530	0.62	-0.4
2,764,514	-		LU632_RS14530	0.65	+0.2
2,764,559	+		LU632_RS14530	0.71	+0.2
2,764,560	-		LU632_RS14530	0.72	-0.3
2,764,600	+		LU632_RS14530	0.77	+1.7
2,764,600	+		LU632_RS14530	0.77	-0.9
2,764,600	+		LU632_RS14530	0.77	+0.3
2,764,600	+		LU632_RS14530	0.77	+1.4
2,764,600	+		LU632_RS14530	0.77	+0.9
2,764,601	-		LU632_RS14530	0.78	+0.7
2,764,601	-		LU632_RS14530	0.78	-1.2
2,764,603	+		LU632_RS14530	0.78	-1.4
2,764,622	+		LU632_RS14530	0.81	-0.9
2,764,623	-		LU632_RS14530	0.81	+0.4
2,764,623	-		LU632_RS14530	0.81	+0.5
2,764,881	+		LU632_RS14535	0.39	-0.1
2,764,921	+		LU632_RS14535	0.50	-3.0
2,764,921	+		LU632_RS14535	0.50	+0.2
2,765,012	-		LU632_RS14535	0.77	-0.1
2,765,105	+				+0.0
2,765,210	-		LU632_RS14540	0.20	+0.5
2,765,210	-		LU632_RS14540	0.20	+2.0
2,765,325	+		LU632_RS14540	0.40	+0.2
2,765,325	+		LU632_RS14540	0.40	+0.9
2,765,326	-		LU632_RS14540	0.41	-1.0
2,765,326	-		LU632_RS14540	0.41	-1.0
2,765,367	+		LU632_RS14540	0.48	-0.4
2,765,368	-		LU632_RS14540	0.48	+0.5
2,765,437	-		LU632_RS14540	0.60	+0.5
2,765,437	-		LU632_RS14540	0.60	+1.7
2,765,614	+				+0.4
2,765,614	+				-0.3
2,765,615	-				+0.2
2,765,615	-				-1.8
2,765,824	+		LU632_RS14545	0.47	+0.5
2,765,825	-		LU632_RS14545	0.48	-1.0
2,765,925	+		LU632_RS14545	0.88	-1.5
2,765,987	-				+0.2
2,765,989	-				+1.1
2,765,991	-				+3.4
2,766,133	+		LU632_RS14550	0.18	-0.8
2,766,246	-		LU632_RS14550	0.28	-0.4
2,766,254	+		LU632_RS14550	0.28	-0.9
2,766,254	+		LU632_RS14550	0.28	+0.9
2,766,258	+		LU632_RS14550	0.29	-0.4
2,766,258	+		LU632_RS14550	0.29	-0.8
2,766,259	-		LU632_RS14550	0.29	+0.1
2,766,259	-		LU632_RS14550	0.29	-0.7
2,766,314	+		LU632_RS14550	0.34	+0.8
2,766,315	-		LU632_RS14550	0.34	+0.4
2,766,317	-		LU632_RS14550	0.34	-2.4
2,766,360	+		LU632_RS14550	0.38	+0.0
2,766,363	-		LU632_RS14550	0.38	+0.2
2,766,460	-		LU632_RS14550	0.47	+1.8
2,766,567	+		LU632_RS14550	0.56	-1.1
2,766,567	+		LU632_RS14550	0.56	-1.2
2,766,568	-		LU632_RS14550	0.56	+1.3
2,766,568	-		LU632_RS14550	0.56	+1.5
2,766,568	-		LU632_RS14550	0.56	-2.5