Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14175

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,717,079	-		LU632_RS14170	0.53	-0.0
2,717,127	+		LU632_RS14170	0.55	-1.6
2,717,212	+		LU632_RS14170	0.59	+2.0
2,717,585	+		LU632_RS14170	0.78	-1.0
2,717,621	-		LU632_RS14170	0.80	-0.8
2,717,681	+		LU632_RS14170	0.83	+2.9
2,717,686	-		LU632_RS14170	0.83	+0.2
2,717,740	+		LU632_RS14170	0.86	-0.6
2,717,921	-				-0.1
2,718,065	+				+1.0
2,718,333	-		LU632_RS14175	0.10	+0.4
2,718,339	-		LU632_RS14175	0.10	-0.3
2,718,383	-		LU632_RS14175	0.12	-1.3
2,718,470	+		LU632_RS14175	0.15	-0.2
2,718,491	+		LU632_RS14175	0.15	+0.8
2,718,494	+		LU632_RS14175	0.16	-1.5
2,718,494	+		LU632_RS14175	0.16	+0.5
2,718,495	-		LU632_RS14175	0.16	-1.4
2,718,500	+		LU632_RS14175	0.16	-0.5
2,718,683	-		LU632_RS14175	0.22	+3.4
2,718,685	+		LU632_RS14175	0.22	+0.2
2,718,751	+		LU632_RS14175	0.24	-0.5
2,718,751	+		LU632_RS14175	0.24	-2.3
2,718,751	+		LU632_RS14175	0.24	+0.1
2,718,752	-		LU632_RS14175	0.24	+0.4
2,718,756	-		LU632_RS14175	0.24	+0.2
2,718,756	-		LU632_RS14175	0.24	+0.4
2,718,756	-		LU632_RS14175	0.24	+3.4
2,718,771	+		LU632_RS14175	0.25	-0.5
2,718,805	+		LU632_RS14175	0.26	+4.0
2,718,805	+		LU632_RS14175	0.26	-0.4
2,718,806	-		LU632_RS14175	0.26	+1.2
2,718,806	-		LU632_RS14175	0.26	+1.2
2,718,837	-		LU632_RS14175	0.27	-0.8
2,718,970	-		LU632_RS14175	0.32	-0.9
2,719,012	-		LU632_RS14175	0.33	+0.1
2,719,012	-		LU632_RS14175	0.33	+0.1
2,719,012	-		LU632_RS14175	0.33	+0.2
2,719,013	+		LU632_RS14175	0.33	-0.8
2,719,014	-		LU632_RS14175	0.33	+0.6
2,719,051	+		LU632_RS14175	0.34	+0.6
2,719,105	+		LU632_RS14175	0.36	+1.1
2,719,126	+		LU632_RS14175	0.37	+0.1
2,719,127	-		LU632_RS14175	0.37	-0.1
2,719,130	+		LU632_RS14175	0.37	-2.0
2,719,130	+		LU632_RS14175	0.37	-0.8
2,719,130	+		LU632_RS14175	0.37	+0.8
2,719,131	-		LU632_RS14175	0.37	+0.1
2,719,131	-		LU632_RS14175	0.37	-0.7
2,719,133	+		LU632_RS14175	0.37	+0.1
2,719,133	+		LU632_RS14175	0.37	+1.6
2,719,189	+		LU632_RS14175	0.39	-0.2
2,719,189	+		LU632_RS14175	0.39	+0.8
2,719,189	+		LU632_RS14175	0.39	-0.3
2,719,189	+		LU632_RS14175	0.39	-1.5
2,719,190	-		LU632_RS14175	0.39	-1.4
2,719,190	-		LU632_RS14175	0.39	-0.2
2,719,190	-		LU632_RS14175	0.39	-1.2
2,719,196	+		LU632_RS14175	0.39	-0.2
2,719,342	+		LU632_RS14175	0.44	-1.1
2,719,342	+		LU632_RS14175	0.44	-0.4
2,719,358	+		LU632_RS14175	0.45	+0.6
2,719,420	+		LU632_RS14175	0.47	-0.5
2,719,421	-		LU632_RS14175	0.47	+1.1
2,719,439	+		LU632_RS14175	0.47	-0.5
2,719,490	-		LU632_RS14175	0.49	-0.6
2,719,523	-		LU632_RS14175	0.50	+1.2
2,719,683	+		LU632_RS14175	0.56	+0.6
2,719,684	-		LU632_RS14175	0.56	-0.2
2,719,784	+		LU632_RS14175	0.59	-0.8
2,719,797	+		LU632_RS14175	0.60	+0.2
2,719,893	+		LU632_RS14175	0.63	-0.4
2,719,916	-		LU632_RS14175	0.64	-0.4
2,719,944	-		LU632_RS14175	0.64	-0.4
2,720,059	+		LU632_RS14175	0.68	-0.6
2,720,130	+		LU632_RS14175	0.71	+4.2
2,720,166	+		LU632_RS14175	0.72	+0.5
2,720,317	+		LU632_RS14175	0.77	-1.2
2,720,381	-		LU632_RS14175	0.79	+0.2
2,720,437	-		LU632_RS14175	0.81	+2.5
2,720,517	-		LU632_RS14175	0.84	-1.7
2,720,552	+		LU632_RS14175	0.85	-0.3
2,720,574	+		LU632_RS14175	0.86	-1.0
2,720,576	+		LU632_RS14175	0.86	-0.8
2,720,781	-				+0.6
2,720,800	-				+2.6
2,720,832	-				-0.0
2,720,914	+				+0.9
2,720,951	+				-0.4
2,720,951	+				-0.3
2,720,951	+				-3.2
2,720,970	+				-1.0
2,720,971	-				+0.2
2,720,971	-				-0.4
2,720,971	-				-0.8
2,720,991	+				-1.9
2,720,992	-				-1.8
2,720,992	-				+0.6
2,720,993	+				+1.2
2,720,993	+				-0.6
2,721,677	+				+0.0
2,721,856	+				+1.2
2,721,856	+				+1.1
2,721,856	+				-1.7
2,721,856	+				-1.4
2,721,856	+				+0.5
2,721,857	-				-1.1
2,721,857	-				+1.5
2,721,857	-				-0.4
2,721,857	-				-0.1
2,721,883	+				-0.1